View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1865_low_2 (Length: 552)
Name: NF1865_low_2
Description: NF1865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1865_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 23 - 373
Target Start/End: Complemental strand, 2069467 - 2069117
Alignment:
| Q |
23 |
aatgtcgtgaatgcacaagcgaatattcaagtttcagactttgaggagactccttctgatactcacatattggttggtaatacatcagttcctccgcatt |
122 |
Q |
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| T |
2069467 |
aatgtcatgaatgcacaagcgaatattcaagtttcagactttgaggagactccttctgatactcacattttggttggtaatacatcaattcctctgcatt |
2069368 |
T |
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| Q |
123 |
gtgtggcgcctatacaaagagacattgatgttattagcgcagacaaggtctcaggcgccctctttgttctactattcttcaaagagataatgatttaatt |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2069367 |
gtgtggcgcctatacaaagagacattgatgttattagcgcagacaaggtctcaggcgccctccttgttctactattcttcaaagagataatgatttaatt |
2069268 |
T |
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| Q |
223 |
gagcaagatttggctttggaccgttaacatcattcaccccttatctatccaacaatcgtgagaagaaaatcaatcattgctcggaaggaggcctataaca |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2069267 |
gagcaagatttggctttggaccgttaacatcattcaccccttatctatccaacaatcgtgagaagaaaatcaatcattgctccgaaggaggcctataaca |
2069168 |
T |
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| Q |
323 |
cttgctccaagggggaacacaagggcagttgagttgtaccattcaaccttc |
373 |
Q |
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| T |
2069167 |
cttgctccaagggggaacacaagggcggttgagttgtaccattcaaccttc |
2069117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 23 - 359
Target Start/End: Complemental strand, 2073813 - 2073477
Alignment:
| Q |
23 |
aatgtcgtgaatgcacaagcgaatattcaagtttcagactttgaggagactccttctgatactcacatattggttggtaatacatcagttcctccgcatt |
122 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
2073813 |
aatgttgtgaatgcacaagcgaatattcaagtttcagactttgaggagactccttctgatactcacattttggttggtaatacatcaattcctccgcatt |
2073714 |
T |
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| Q |
123 |
gtgtggcgcctatacaaagagacattgatgttattagcgcagacaaggtctcaggcgccctctttgttctactattcttcaaagagataatgatttaatt |
222 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2073713 |
gtgtggcgcctatacaaagagacattcatgttattagcgcggacaaggtctcaggcgccctccttgttctactattcttcaaagagataatgatttaatt |
2073614 |
T |
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| Q |
223 |
gagcaagatttggctttggaccgttaacatcattcaccccttatctatccaacaatcgtgagaagaaaatcaatcattgctcggaaggaggcctataaca |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2073613 |
gagcaagatttggctttggaccgttaacatcattcaccccttatctatccaacaatcgtgagaagaaaatcaatcattgctccgaaggaggcctataaca |
2073514 |
T |
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| Q |
323 |
cttgctccaagggggaacacaagggcagttgagttgt |
359 |
Q |
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| T |
2073513 |
cttgctccaagggggaacacaagggcggttgagttgt |
2073477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 454 - 544
Target Start/End: Complemental strand, 2069029 - 2068939
Alignment:
| Q |
454 |
taataatatatcttgtaagtgagagacagaagatgagggttctttagaggtgtctacttaatttgggatcttcaaattttccacctatgct |
544 |
Q |
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|||||||||||||| ||||||||||| ||| |||||||||||||| ||||||| ||| |||||||||||||||||||||||||| |||||| |
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| T |
2069029 |
taataatatatcttataagtgagagagagaggatgagggttctttggaggtgtttacctaatttgggatcttcaaattttccacttatgct |
2068939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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