View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1865_low_3 (Length: 422)
Name: NF1865_low_3
Description: NF1865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1865_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 123; Significance: 5e-63; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 255 - 405
Target Start/End: Original strand, 39276437 - 39276582
Alignment:
| Q |
255 |
atggcttgtgtgaaggaaccaactaaactaaactaatttgtgtaattaggacagaaacgcatctcattcgttattatgatgtgtcaaaccatggaggatt |
354 |
Q |
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| T |
39276437 |
atggcttgtgtgaaggaaccaact-----aaactaatttgtgtaattaggacagaaacgcatctgattcgttattatgatgtgtcaaaccatggaggatt |
39276531 |
T |
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| Q |
355 |
cccatcgaaccatattctacactccatataaagaatctggttctagcaatt |
405 |
Q |
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| T |
39276532 |
cccatggaaccatattctacactccatataaagaatctggttctagcaatt |
39276582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 4 - 164
Target Start/End: Original strand, 39276217 - 39276383
Alignment:
| Q |
4 |
ggtagattatactagacataaatgttagttatactagttagatccaaaagtgtattcaatagtaggttgttagttgttactt------tccaccacccta |
97 |
Q |
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| T |
39276217 |
ggtagattctattagacataaatgttagttatactagttagatccaaaagtgtattcaatagtaggttgttagttgttactactagtattttccacccta |
39276316 |
T |
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| Q |
98 |
taagtcttcaatatcgtttgaacggaggtaacacagttttgaatgatgaaactatcaaattttaatt |
164 |
Q |
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| T |
39276317 |
taagtcttcaatatcgtttgaacggaggtaacacagttttgaatgatgaaactatcaaattttaatt |
39276383 |
T |
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