View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1865_low_6 (Length: 354)

Name: NF1865_low_6
Description: NF1865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1865_low_6
NF1865_low_6
[»] chr2 (2 HSPs)
chr2 (8-339)||(34622717-34623037)
chr2 (11-193)||(34615538-34615720)
[»] chr4 (2 HSPs)
chr4 (56-250)||(420013-420207)
chr4 (301-336)||(419946-419981)
[»] chr7 (8 HSPs)
chr7 (32-184)||(2577836-2577988)
chr7 (11-166)||(37367540-37367695)
chr7 (12-165)||(44071812-44071965)
chr7 (11-165)||(47039426-47039580)
chr7 (11-165)||(47033142-47033296)
chr7 (9-56)||(46584521-46584568)
chr7 (51-103)||(19218161-19218213)
chr7 (77-165)||(47035348-47035436)
[»] scaffold0035 (2 HSPs)
scaffold0035 (90-130)||(21945-21985)
scaffold0035 (13-55)||(21891-21933)
[»] scaffold0081 (1 HSPs)
scaffold0081 (51-144)||(42240-42330)
[»] chr5 (2 HSPs)
chr5 (90-128)||(1011425-1011463)
chr5 (13-53)||(1011474-1011514)
[»] chr6 (1 HSPs)
chr6 (20-56)||(630445-630481)
[»] chr1 (1 HSPs)
chr1 (51-103)||(51693681-51693733)


Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 8 - 339
Target Start/End: Original strand, 34622717 - 34623037
Alignment:
Q  8 gtgtaggttttggaattggctgggaatgctgcaagagacaacaagaagacaagaattgtgccaagacacattcaattggctgtgaggaatgatgaagaat 107  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  34622717 gtgtaggttttggaattggctggaaatgctgcaagagacaacaagaagacaagaattgtgccaagacacattcaattggctgtgaggaacgatgaagaat 34622816  T
Q  108 tgagcaagcttcttggtgatgttactattgctaatggtggtgttatgccaaatattcacaacttgttgcttccaaagaaagctggtggtaacaacaaggg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34622817 tgagcaagcttcttggtgatgttactattgctaatggtggtgttatgccaaatattcacaacttgttgcttccaaagaaagctggtggtaacaacaaggg 34622916  T
Q  208 tgccgatgatgaatgaatgaatcttagctgaaaaacttgagttttgaagaatcaatgttaaatttagtttattaactgtgttaaa-gggtgttg--gtct 304  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||              ||||||||||||||| ||||||||| |||| |||  ||||    
T  34622917 tgctgatgatgaatgaatgaatcttagctgaaaaacttgagttttg--------------aatttagtttattaattgtgttaaatgggtcttggtgtct 34623002  T
Q  305 ttgtagttctagttaggggtttagttaaatgatgt 339  Q
    ||||||||||||||||| |||||||||||||||||    
T  34623003 ttgtagttctagttaggtgtttagttaaatgatgt 34623037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 11 - 193
Target Start/End: Original strand, 34615538 - 34615720
Alignment:
Q  11 taggttttggaattggctgggaatgctgcaagagacaacaagaagacaagaattgtgccaagacacattcaattggctgtgaggaatgatgaagaattga 110  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  34615538 taggttttggaattggctggaaatgctgcaagagacaacaagaagacaagaattgtgccaagacacattcaattggctgtgaggaacgatgaagaattga 34615637  T
Q  111 gcaagcttcttggtgatgttactattgctaatggtggtgttatgccaaatattcacaacttgttgcttccaaagaaagctggt 193  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  34615638 gcaagcttcttggtgatgttaccattgctaatggtggtgttatgcccaatattcacaacttgttgcttccaaagaaggctggt 34615720  T

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Target: chr4 (Bit Score: 183; Significance: 6e-99; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 56 - 250
Target Start/End: Complemental strand, 420207 - 420013
Alignment:
Q  56 acaagaattgtgccaagacacattcaattggctgtgaggaatgatgaagaattgagcaagcttcttggtgatgttactattgctaatggtggtgttatgc 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  420207 acaagaattgtgccaagacacattcaattggctgtgaggaatgatgaagaattgagcaagcttcttggtgatgttactattgctaatggtggtgttatgc 420108  T
Q  156 caaatattcacaacttgttgcttccaaagaaagctggtggtaacaacaagggtgccgatgatgaatgaatgaatcttagctgaaaaacttgagtt 250  Q
    | ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  420107 ccaatattcacaacttgttgcttccaaagaaagctggtggtaacaccaagggtgctgatgatgaatgaatgaatcttagctgaaaaacttgagtt 420013  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 301 - 336
Target Start/End: Complemental strand, 419981 - 419946
Alignment:
Q  301 gtctttgtagttctagttaggggtttagttaaatga 336  Q
    ||||||||||||||||||||||||||||||||||||    
T  419981 gtctttgtagttctagttaggggtttagttaaatga 419946  T

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Target: chr7 (Bit Score: 89; Significance: 8e-43; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 32 - 184
Target Start/End: Complemental strand, 2577988 - 2577836
Alignment:
Q  32 aatgctgcaagagacaacaagaagacaagaattgtgccaagacacattcaattggctgtgaggaatgatgaagaattgagcaagcttcttggtgatgtta 131  Q
    |||||||||||||||  |||||| |   ||||||||||||| || |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  2577988 aatgctgcaagagaccgcaagaaaattcgaattgtgccaaggcatattcaattggttgtgaggaacgatgaagaattgagcaagcttcttggtgatgtta 2577889  T
Q  132 ctattgctaatggtggtgttatgccaaatattcacaacttgttgcttccaaag 184  Q
    | ||||| ||||| |||||||||| ||||||||||||  ||||||||||||||    
T  2577888 ccattgccaatggcggtgttatgcaaaatattcacaatctgttgcttccaaag 2577836  T

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Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 11 - 166
Target Start/End: Complemental strand, 37367695 - 37367540
Alignment:
Q  11 taggttttggaattggctgggaatgctgcaagagacaacaagaagacaagaattgtgccaagacacattcaattggctgtgaggaatgatgaagaattga 110  Q
    |||||||||||||||||||| ||||||||||| || |||||||||||||| ||||| ||||| ||| ||||| | ||||||||||| |||||||||||||    
T  37367695 taggttttggaattggctggtaatgctgcaagggataacaagaagacaaggattgtaccaaggcaccttcaactcgctgtgaggaacgatgaagaattga 37367596  T
Q  111 gcaagcttcttggtgatgttactattgctaatggtggtgttatgccaaatattcac 166  Q
    ||||  |  | ||  |||| ||||||||||||||||||||| |||| || ||||||    
T  37367595 gcaaattgttgggacatgtgactattgctaatggtggtgttttgcctaacattcac 37367540  T

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Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 165
Target Start/End: Complemental strand, 44071965 - 44071812
Alignment:
Q  12 aggttttggaattggctgggaatgctgcaagagacaacaagaagacaagaattgtgccaagacacattcaattggctgtgaggaatgatgaagaattgag 111  Q
    ||||||||||||||||||| || ||||| || |||||||||||||   ||||||| ||||| || |||||  | |||||||||||||| |||||| | ||    
T  44071965 aggttttggaattggctggtaacgctgccagggacaacaagaagaatcgaattgttccaaggcatattcagcttgctgtgaggaatgacgaagaactcag 44071866  T
Q  112 caagcttcttggtgatgttactattgctaatggtggtgttatgccaaatattca 165  Q
    ||||||| | || | ||| || |||||||||||||||||| |||| ||||||||    
T  44071865 caagcttttgggagctgtaaccattgctaatggtggtgttttgcccaatattca 44071812  T

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Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 11 - 165
Target Start/End: Original strand, 47039426 - 47039580
Alignment:
Q  11 taggttttggaattggctgggaatgctgcaagagacaacaagaagacaagaattgtgccaagacacattcaattggctgtgaggaatgatgaagaattga 110  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||   | ||||| ||||| ||||||||  | || |||||||| || || ||| | |    
T  47039426 taggttttggaattggctgggaacgctgccagagacaacaagaagaaccgtattgtaccaaggcacattcagcttgcagtgaggaacgacgaggaactca 47039525  T
Q  111 gcaagcttcttggtgatgttactattgctaatggtggtgttatgccaaatattca 165  Q
    |||||||| | ||   ||| || |||||||||||||||||| |||| ||||||||    
T  47039526 gcaagcttttgggaactgtgaccattgctaatggtggtgttttgcccaatattca 47039580  T

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Target: chr7; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 11 - 165
Target Start/End: Original strand, 47033142 - 47033296
Alignment:
Q  11 taggttttggaattggctgggaatgctgcaagagacaacaagaagacaagaattgtgccaagacacattcaattggctgtgaggaatgatgaagaattga 110  Q
    |||||||||||||||||||| ||||| || || |||||||||||||   | ||||| ||||| ||||||||  | ||||| || || ||||||||| | |    
T  47033142 taggttttggaattggctggaaatgccgctagggacaacaagaagaaccgtattgtaccaaggcacattcagcttgctgttagaaacgatgaagaactca 47033241  T
Q  111 gcaagcttcttggtgatgttactattgctaatggtggtgttatgccaaatattca 165  Q
    |||||||| | ||   ||| || |||||||||||||||||| |||| ||||||||    
T  47033242 gcaagcttttaggaactgtgaccattgctaatggtggtgttctgcccaatattca 47033296  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 46584521 - 46584568
Alignment:
Q  9 tgtaggttttggaattggctgggaatgctgcaagagacaacaagaaga 56  Q
    |||||||| | |||||||||||||||||||||||||| ||||||||||    
T  46584521 tgtaggttcttgaattggctgggaatgctgcaagagataacaagaaga 46584568  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 19218213 - 19218161
Alignment:
Q  51 agaagacaagaattgtgccaagacacattcaattggctgtgaggaatgatgaa 103  Q
    |||||||| ||||||||||| | || |||||||||| ||||||||| ||||||    
T  19218213 agaagacacgaattgtgccatggcatattcaattggatgtgaggaacgatgaa 19218161  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 165
Target Start/End: Complemental strand, 47035436 - 47035348
Alignment:
Q  77 attcaattggctgtgaggaatgatgaagaattgagcaagcttcttggtgatgttactattgctaatggtggtgttatgccaaatattca 165  Q
    |||||| | ||||| ||||| ||||||||| | ||||||||| | || | ||| || |||||||||||||||||| |||| || |||||    
T  47035436 attcaacttgctgttaggaacgatgaagaactaagcaagcttttgggagctgtaaccattgctaatggtggtgttttgcctaacattca 47035348  T

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Target: scaffold0035 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 21945 - 21985
Alignment:
Q  90 tgaggaatgatgaagaattgagcaagcttcttggtgatgtt 130  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  21945 tgaggaacgatgaagaattgagcaagcttcttggtgatgtt 21985  T

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Target: scaffold0035; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 21891 - 21933
Alignment:
Q  13 ggttttggaattggctgggaatgctgcaagagacaacaagaag 55  Q
    |||||| ||||||||||| ||||||||||| ||||||||||||    
T  21891 ggttttagaattggctggaaatgctgcaagggacaacaagaag 21933  T

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Target: scaffold0081 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 144
Target Start/End: Complemental strand, 42330 - 42240
Alignment:
Q  51 agaagacaagaattgtgccaagacacattcaattggctgtgaggaatgatgaagaattgagcaagcttcttggtgatgttactattgctaatgg 144  Q
    |||||||| ||||||||||| | || |||||||||| ||||||||| |||||| || |||| ||| ||||   ||||||||| |||||||||||    
T  42330 agaagacacgaattgtgccatggcatattcaattggatgtgaggaacgatgaataaatgagaaagattct---tgatgttaccattgctaatgg 42240  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 128
Target Start/End: Complemental strand, 1011463 - 1011425
Alignment:
Q  90 tgaggaatgatgaagaattgagcaagcttcttggtgatg 128  Q
    ||||||| |||| ||||||||||||||||||||||||||    
T  1011463 tgaggaacgatgcagaattgagcaagcttcttggtgatg 1011425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 1011514 - 1011474
Alignment:
Q  13 ggttttggaattggctgggaatgctgcaagagacaacaaga 53  Q
    |||||| ||||||||||| ||||||||||| ||||||||||    
T  1011514 ggttttagaattggctggaaatgctgcaagggacaacaaga 1011474  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 630445 - 630481
Alignment:
Q  20 gaattggctgggaatgctgcaagagacaacaagaaga 56  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  630445 gaattggctgggaatgttgcaagagataacaagaaga 630481  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 51693733 - 51693681
Alignment:
Q  51 agaagacaagaattgtgccaagacacattcaattggctgtgaggaatgatgaa 103  Q
    |||||||| ||||||||||| | || |||||||||| ||||||||| ||||||    
T  51693733 agaagacacgaattgtgccatggcatattcaattggatgtgaggaacgatgaa 51693681  T

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