View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1865_low_7 (Length: 350)
Name: NF1865_low_7
Description: NF1865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1865_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 14 - 333
Target Start/End: Complemental strand, 4371061 - 4370742
Alignment:
| Q |
14 |
cacagaatatggagatttcttccttgattggtactcaagcaaacttgttgaacatggtgagaaaattcttgtatcagctaaaagcatattccaaacaagt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4371061 |
cacagaatatggagatttcttccttgattggtactcaagcaagcttgttgaacatggtgagaaaattcttgtatcagctaaaagcatattccaaacaagt |
4370962 |
T |
|
| Q |
114 |
ggagtgaaactatctgccaaaatagctggaattcattggcattacaatgcaagatcacatgcaactgaattaactgcaggttactataacacaaggtttc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4370961 |
ggagtgaaactatctgccaaaatagctggaattcattggcattacaatgcaagatcacatgcaactgaattaactgcaggttactataacacaaggtttc |
4370862 |
T |
|
| Q |
214 |
atgatggttatataccaatagcacaaatgcttgcaaaacatggagttatactaaatttcacatgcatggaaatgaaggataatgaacaacctggccatgc |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4370861 |
atgatggttatataccaatagcacaaatgctagcaaaacatggagttatattgaatttcacatgcatggaaatgaaggataatgaacaacctggccatgc |
4370762 |
T |
|
| Q |
314 |
taattgttcaccagaaggat |
333 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
4370761 |
taattgttcaccagaaggat |
4370742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 14 - 333
Target Start/End: Complemental strand, 4363258 - 4362939
Alignment:
| Q |
14 |
cacagaatatggagatttcttccttgattggtactcaagcaaacttgttgaacatggtgagaaaattcttgtatcagctaaaagcatattccaaacaagt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4363258 |
cacagaatatggagatttcttccttgattggtactcaagcaagcttgttgaacatggtgagaaaattcttgtatcagctaaaagcatattccaaacaagt |
4363159 |
T |
|
| Q |
114 |
ggagtgaaactatctgccaaaatagctggaattcattggcattacaatgcaagatcacatgcaactgaattaactgcaggttactataacacaaggtttc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4363158 |
ggagtgaaactatctgccaaaatagctggaattcattggcattacaatgcaagatcacatgcaactgaattaactgcaggttactataacacaaagtttc |
4363059 |
T |
|
| Q |
214 |
atgatggttatataccaatagcacaaatgcttgcaaaacatggagttatactaaatttcacatgcatggaaatgaaggataatgaacaacctggccatgc |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
4363058 |
atgatggttatataccaatagcacaaatgctagcaaaacatggagttatattgaatttcacatgcatggaaatgaaggataatgaacaaccttgtgatgc |
4362959 |
T |
|
| Q |
314 |
taattgttcaccagaaggat |
333 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
4362958 |
aaattgttcaccagaaggat |
4362939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 81 - 331
Target Start/End: Original strand, 41043862 - 41044112
Alignment:
| Q |
81 |
cttgtatcagctaaaagcatattccaaacaagtggagtgaaactatctgccaaaatagctggaattcattggcattacaatgcaagatcacatgcaactg |
180 |
Q |
| |
|
||||||||||| ||| |||||||| ||| ||| ||||||||||||| ||| | || ||||| ||||||||||||| |||| || || ||| ||| |
|
|
| T |
41043862 |
cttgtatcagccaaagaaatattccagacatctggtgtgaaactatctggtaaagttgcgggaatccattggcattacagatcaaggtcgcacgcagctg |
41043961 |
T |
|
| Q |
181 |
aattaactgcaggttactataacacaaggtttcatgatggttatataccaatagcacaaatgcttgcaaaacatggagttatactaaatttcacatgcat |
280 |
Q |
| |
|
|| ||||||| |||||||||||||| || | ||||||| ||| | ||||| || ||||| ||||||| |||| ||| | | |||||||| ||||| |
|
|
| T |
41043962 |
aactaactgctggttactataacactagacataatgatgggtatcttccaattgccaaaatgtttgcaaaccatgacgttgtcttcaatttcacctgcat |
41044061 |
T |
|
| Q |
281 |
ggaaatgaaggataatgaacaacctggccatgctaattgttcaccagaagg |
331 |
Q |
| |
|
||||||||| || | ||||||||||| |||||||| ||||| |||||||| |
|
|
| T |
41044062 |
ggaaatgaaagacagagaacaacctggacatgctaactgttcgccagaagg |
41044112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University