View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1865_low_8 (Length: 272)
Name: NF1865_low_8
Description: NF1865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1865_low_8 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-150; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 12040150 - 12040421
Alignment:
| Q |
1 |
atggcttaaaaacttcatttcacttaaggaacttcacattcgagattgtttccatttgaagtctctacctgaaggtttccggtctttgagttcactcgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12040150 |
atggcttaaaaacttcatttcacttaaggaacttcacattcgagattgtttccatttgaagtctctacctgaaggtttccggtctttgagttcactcgaa |
12040249 |
T |
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| Q |
101 |
acactcactattgaaagatgtcaacaacttgatcttgagtcctccccaaatgagtgggagggtctgataaaccttcgttctcttacattaaggagtattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12040250 |
acactcactattgaaagatgtcaacaacttgatcttgagtcctccccaaatgagtgggagggtctgataaaccttcgttctcttacattaaggagtattc |
12040349 |
T |
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| Q |
201 |
caaatctcaagtcccttcctcggggattcgagattgtgaactctttacaagtcttaaggctttatgattgcc |
272 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12040350 |
caaatctcaagtcccttcctcagggattcgagattgtgaactctttacaagtcttaaggctttatgattgcc |
12040421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 11861355 - 11861624
Alignment:
| Q |
1 |
atggcttaaaaacttcatttcacttaaggaacttcacattcgagattgtttccatttgaagtctctacctgaaggtttccggtctttgagttcactcgaa |
100 |
Q |
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|||||| |||||||||||||||||| |||||||||||||| |||||||||| |||| ||||||||| |||||||| |||||||||||||||| || |
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| T |
11861355 |
atggctcaaaaacttcatttcacttgaggaacttcacattagagattgttttaatttagcgtctctaccacaaggtttcaagtctttgagttcactccaa |
11861454 |
T |
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| Q |
101 |
acactcactattgaaagatgtcaacaacttgatcttgagtcctccccaaatgagtgggagggtctgataaaccttcgttctcttacattaaggagtattc |
200 |
Q |
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| T |
11861455 |
acactcactattgaaagatgtcaagaacttgatcttgacaaacatccaaatgagtgggagggtctgaaaaaccttcgttctcttacattaaggagtattc |
11861554 |
T |
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| Q |
201 |
caaatctcaagtcccttcctcggggattcgagattgtgaactctttacaagtcttaaggctttatgattg |
270 |
Q |
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|||| || ||||||||||| ||||| | || | ||||||| |||| ||| ||||||| |||||||||| |
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| T |
11861555 |
caaaacttaagtcccttccatggggagttgaaaatgtgaacactttgaaagacttaaggatttatgattg |
11861624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 2 - 272
Target Start/End: Complemental strand, 11901162 - 11900892
Alignment:
| Q |
2 |
tggcttaaaaacttcatttcacttaaggaacttcacattcgagattgtttccatttgaagtctctacctgaaggtttccggtctttgagttcactcgaaa |
101 |
Q |
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|||||||||||||| |||| ||| |||||||||||||| |||||||| | ||| |||||| |||| |||||||| |||||||||||||||| | |
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| T |
11901162 |
tggcttaaaaactttgtttcgcttgaggaacttcacattagagattgtgttattttaaagtctttaccacaaggtttcaagtctttgagttcactcatat |
11901063 |
T |
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| Q |
102 |
cactcactattgaaagatgtcaacaacttgatcttgagtcctccccaaatgagtgggagggtctgataaaccttcgttctcttacattaaggagtattcc |
201 |
Q |
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||||||||||||| |||||| || |||||||||| || |||| || ||| ||| ||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
11901062 |
cactcactattgagagatgtgaagaacttgatctcgacatctccggaactgaatggaagggtctgagaaagcttcgttctcttacattaaggagtattcc |
11900963 |
T |
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| Q |
202 |
aaatctcaagtcccttcctcggggattcgagattgtgaactctttacaagtcttaaggctttatgattgcc |
272 |
Q |
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|| |||||||||||||| ||| | | || | |||||||||| || | ||||||||||||||||||| |
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| T |
11900962 |
caaactcaagtcccttccaagggaaattgaaaacttgaactctttgcatgatttaaggctttatgattgcc |
11900892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 131
Target Start/End: Original strand, 11829230 - 11829359
Alignment:
| Q |
2 |
tggcttaaaaacttcatttcacttaaggaacttcacattcgagattgtttccatttgaagtctctacctgaaggtttccggtctttgagttcactcgaaa |
101 |
Q |
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|||||||||||||||||||||||| |||||||||||||| |||||||||| |||| |||||||||| |||||||| || ||| || |||||| | |
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| T |
11829230 |
tggcttaaaaacttcatttcacttgaggaacttcacattagagattgttttattttggagtctctaccacaaggtttcaagtttttaagctcactcatat |
11829329 |
T |
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| Q |
102 |
cactcactattgaaagatgtcaacaacttg |
131 |
Q |
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|||| |||||||||||||| ||||||||| |
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| T |
11829330 |
cactttctattgaaagatgtgaacaacttg |
11829359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 11829410 - 11829474
Alignment:
| Q |
155 |
tgggagggtctgataaaccttcgttctcttacattaaggagtattccaaatctcaagtcccttcc |
219 |
Q |
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||||||||||||| |||||||| |||||||||||||||||||||||||| || ||||||||||| |
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| T |
11829410 |
tgggagggtctgaaaaaccttcaatctcttacattaaggagtattccaaaactgaagtcccttcc |
11829474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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