View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18660_high_21 (Length: 234)
Name: NF18660_high_21
Description: NF18660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18660_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 1557076 - 1556851
Alignment:
| Q |
1 |
taagatcttttatcccaatcttaaaaacaaccttattgttcataaaaatgtacatatccattgttctttttgtgaaattcacaattctgaaatacat-ag |
99 |
Q |
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| T |
1557076 |
taagatcttttatcccaatcttaaaaacaaccttattgttcataaaaatgtacatatccattgttctttttgggaaattcacaattctgaaatacattag |
1556977 |
T |
|
| Q |
100 |
ccattaggtgtttgtattgcttttaaagttcaaaacaaacataaacgttgaaataaatcactcatttagatgaaattgaggaaaaatatg----taacta |
195 |
Q |
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| T |
1556976 |
ccattaggtgtttgtattgcttttaaagttcaaaacaaacataaacgttgaaataaatcactcatttagatgaaattgaggaaaaatatgaaactaatta |
1556877 |
T |
|
| Q |
196 |
acacgtgaaaaattgagtgttgatgt |
221 |
Q |
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| T |
1556876 |
acacgtgaaaaattgagtgttgatgt |
1556851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 6773213 - 6773280
Alignment:
| Q |
5 |
atcttttatcccaatcttaaaaacaaccttattgttcataaaaatgtacatatccattgttctttttg |
72 |
Q |
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| T |
6773213 |
atcttttctcacagtcttaaacagaaccttactgttcataaaaaggtacatatccattgttctctttg |
6773280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 16351067 - 16351116
Alignment:
| Q |
130 |
caaaacaaacataaacgttgaaataaatcactcatttagatgaaattgag |
179 |
Q |
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| T |
16351067 |
caaaagaaacataaacgtcgaaacaaatcactcatttagataaaattgag |
16351116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 215
Target Start/End: Complemental strand, 4078907 - 4078855
Alignment:
| Q |
163 |
atttagatgaaattgaggaaaaatatgtaactaacacgtgaaaaattgagtgt |
215 |
Q |
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|||||||| |||||||| |||| ||||||||||||| ||||||||| |||||| |
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| T |
4078907 |
atttagataaaattgagaaaaattatgtaactaacatgtgaaaaatggagtgt |
4078855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 4078962 - 4078906
Alignment:
| Q |
130 |
caaaacaaacataaacgttgaaataaatcactcatttagatgaaattgaggaaaaat |
186 |
Q |
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| T |
4078962 |
caaaagaaacataaacgtcgaaacaaatcacccatttagataaaattgagaaaaaat |
4078906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 16351123 - 16351174
Alignment:
| Q |
164 |
tttagatgaaattgaggaaaaatatgtaactaacacgtgaaaaattgagtgt |
215 |
Q |
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||||||| |||||||| |||| ||||||||||||| ||||||||| |||||| |
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| T |
16351123 |
tttagataaaattgagaaaaattatgtaactaacatgtgaaaaatggagtgt |
16351174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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