View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18660_high_6 (Length: 422)
Name: NF18660_high_6
Description: NF18660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18660_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 33188132 - 33187726
Alignment:
| Q |
1 |
ctccctctcagatgaatcattcaatccgattgcatcgaacaaatttcaaccacagtgaaccactacggcgattgtttaatgacaccactacattaaattc |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
33188132 |
ctccctctcagatgaatcattcaatctgattgcatcgaacaaatttcaaccacagtgaatcactacggcgattgtttaatgacaccactacattaaattc |
33188033 |
T |
|
| Q |
101 |
gtcaaataccaatggacacatttagtgactgtcaataaaattactggtatatgttgcatagacctacaaaaattcctggtcataggtaaatcatacaaca |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
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| T |
33188032 |
gtcaaataccaatggacacatttagtgactgccaataaaactactggtatatgttgcttagacctacgaaaattcctggtcataggtaaatcatacaaca |
33187933 |
T |
|
| Q |
201 |
atataccggttctaactgtatatgtttccgttggtattgagttatgtcaaaatctatgtttattgacatgactttcgttagtataggattaattgggatc |
300 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
33187932 |
atataccggttctaactatatatgtttccgttggtattgagttatgtcaaaacctatgtttattgacatgagtttcgttagtataggattcattgggatc |
33187833 |
T |
|
| Q |
301 |
nnnnnnnaaatattatcgtcttaaagcaggttatttttcctccttttttnnnnnnnnnnnnnnnnntacatcttgatgctagttattttcactctttcct |
400 |
Q |
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||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
33187832 |
ttttgttaaagattatcgtctcaaagcaggttatttttcctccttttttaaaaaataaaaataaaatacatcttgatgctagttattttcactctttcct |
33187733 |
T |
|
| Q |
401 |
ccttgat |
407 |
Q |
| |
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||||||| |
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| T |
33187732 |
ccttgat |
33187726 |
T |
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