View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18660_high_7 (Length: 373)
Name: NF18660_high_7
Description: NF18660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18660_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 369
Target Start/End: Original strand, 32101002 - 32101337
Alignment:
| Q |
18 |
attgaaatgttgttgttaagtgatgtgtattttagtacaatgtctttactttaggtgagggatctgtgactgtgagcatgggtttggtaagaactttctt |
117 |
Q |
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| T |
32101002 |
attgaaatgttgttgttaagtgatgtgtattttagtacaatgtctttactttaggtgagggatctgtga------gcatgggtttggtaagaactttctt |
32101095 |
T |
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| Q |
118 |
tttccgtgactatagctataaattatctcatttgtttatttatgagacatcctttgtttagtaataatactttctctcttatcttatctaggttattctg |
217 |
Q |
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| T |
32101096 |
tttccgtgactatagctataaattatatcatttgtttatttatgagacatcctttgtttagtaataatactttctctcttatct-----aggttattct- |
32101189 |
T |
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| Q |
218 |
cttctgcctatagaattgaagcagtgtttacctttttgaaattggcaaatcatgtgcaagaggacactgcaaatggtggttgtttctttctac-ttgtct |
316 |
Q |
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| T |
32101190 |
-----gcctatagaattgaagcagtgtttacctttttgaaattggcaaatcatgtgcaagaggacactgcaaatggtggttgtttctttctactttgtct |
32101284 |
T |
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| Q |
317 |
tttacttttatcagtgaatgtcaatcaacaaccactcctttcctttgcttctc |
369 |
Q |
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| T |
32101285 |
tttacttttatgagtgaatgtcaatcaacaaccactcctttcctttgtttctc |
32101337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 21472717 - 21472685
Alignment:
| Q |
18 |
attgaaatgttgttgttaagtgatgtgtatttt |
50 |
Q |
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| T |
21472717 |
attgaaatgttgttgttgagtgatgtgtatttt |
21472685 |
T |
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