View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18660_high_8 (Length: 371)
Name: NF18660_high_8
Description: NF18660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18660_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 17 - 359
Target Start/End: Complemental strand, 23335311 - 23334965
Alignment:
| Q |
17 |
aagaaggtctagttgaataggtggatctgaagaacctcttttttcttcttctgaagcttttccttgttgtgttgagaagaaacttggtaatggatctttg |
116 |
Q |
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| T |
23335311 |
aagaaggtctagttgaataggtggatctgaagaacctcttttttcttcttctgaggtttttccttgttgtgttgagaagaaacttggtaatggatctttg |
23335212 |
T |
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| Q |
117 |
ttgggtttgtcaagaaaagagaaaggtaattttggtgtgtcacctaagctcaaagcaagttccattttagagcacaa---tgtttgtgatagtatgaagt |
213 |
Q |
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| T |
23335211 |
ttgggtttgtcaagaaaagagagaggtaattttggtgtgtcacctaagctcaaagcaagttccattttagagcacaatgttgtttgtgatagtatgaagt |
23335112 |
T |
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| Q |
214 |
tgttggtagaaaaagaatgagagtgcaaatagaaatgaagttatgaaactctttacacaagaaaaagaagaa-gagaataatgggtttttatttgtgatg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||| |
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| T |
23335111 |
tgttggtagaaaaagaatgagagtgcaaatagaaatgaagttatgaaactctttacacaagaaaaagaagaaggggaataatgggattttatttgtgatg |
23335012 |
T |
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| Q |
313 |
tttgaaagggtttgggaggagtaaagattgaccgacaaacacaggtt |
359 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
23335011 |
tttgaaaggatttgggaggagtaaagattgaccgacaaacacaggtt |
23334965 |
T |
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