View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18660_low_1 (Length: 751)
Name: NF18660_low_1
Description: NF18660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18660_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 558; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 104 - 728
Target Start/End: Complemental strand, 4632307 - 4631683
Alignment:
| Q |
104 |
caataagctcatgaatttataagatatttttaggcttatttcaataagctatcttggagataagctcaaataagttatttctataaaatctctaaaacta |
203 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
4632307 |
caataagctcatgaatttataagatatttttaggcttatttcaataagctatcttggagataagctcaa-taagttatttctataaaatctctaaaacta |
4632209 |
T |
|
| Q |
204 |
tctcacaagttctgatgctagagacgtgatcgtagggaaatcgaaagatttaaaagagaattctgaagaggaatggtatgtgattgatttgaaagatgat |
303 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4632208 |
tctcacaagttctgatgctagagacgtgatcgccgggaaatcgaaagatttaaaagagaattctgaagagaaatggtatgtgattgatttgaaagatgat |
4632109 |
T |
|
| Q |
304 |
aagagtttgatgaacaaggagaatttgaattctaagggaaaatcaagtcatggatcagctttgaaacatattaatggagcagcttcggtttccgggtttg |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4632108 |
aagagtttgatgaacaaggagaatttgaattctaagggaaaatcaagtcatggatcagctttgaaacatattaatggagcagcttcggtttccaggtttg |
4632009 |
T |
|
| Q |
404 |
tttcttctaacaagcatgaaaagagcatatttgattcacctcctttgcataaacaacaaagtgaagggaaaatattaatccttgatttttcagatcattt |
503 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4632008 |
tttcttctaacaagcatgaaaagagcatatttgattcacctcctttgcataaacaacaaagtgaagggaaaatattaatccttgatttttcagatcattt |
4631909 |
T |
|
| Q |
504 |
tggaaatgtaattttataatccatcaagcacaagtactttagaatcttcgtaatctaagttaacaagcatgatagacccatcttgaatttcgtatgttat |
603 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
4631908 |
tggaaatgtaattttataatccatcaagcacaagtactttagaatcttcgtaatctaagttaacaagcatggtagacccatcttgaatttcgtatgttat |
4631809 |
T |
|
| Q |
604 |
-gtttacagtttttcggaattatatgcatgtaatatgtatgatttgaatcagtttccttttaaccaaattaataaatatgtgtttacctacaataatcca |
702 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||| || |
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| T |
4631808 |
cgtttacagattttcggaattatatgcatgtagtatgtatgatttaaatcagttttcttttaaccaaattaataaatatgtgtttgcctacaataagtca |
4631709 |
T |
|
| Q |
703 |
ttccactacaacaaaattttccaaaa |
728 |
Q |
| |
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|||| ||||||||||||||||||||| |
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| T |
4631708 |
ttcctctacaacaaaattttccaaaa |
4631683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 622 - 724
Target Start/End: Complemental strand, 27002587 - 27002485
Alignment:
| Q |
622 |
ttatatgcatgtaatatgtatgatttgaatcagtttccttttaaccaaattaataaatatgtgtttacctacaataatccattccactacaacaaaattt |
721 |
Q |
| |
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|||||||||| |||||| | || || | |||||||| ||||||| || ||||| |||| ||||||| || ||||||| ||||| ||| |||||||||| |
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| T |
27002587 |
ttatatgcatataatatctttgtttgggatcagtttgcttttaagcatattaacaaatctgtgtttgtctgtaataatctattcctctataacaaaattt |
27002488 |
T |
|
| Q |
722 |
tcc |
724 |
Q |
| |
|
||| |
|
|
| T |
27002487 |
tcc |
27002485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 140
Target Start/End: Complemental strand, 32443778 - 32443749
Alignment:
| Q |
111 |
ctcatgaatttataagatatttttaggctt |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
32443778 |
ctcatgaatttataagatatttttaggctt |
32443749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 216 - 475
Target Start/End: Complemental strand, 48250458 - 48250199
Alignment:
| Q |
216 |
tgatgctagagacgtgatcgtagggaaatcgaaagatttaaaagagaattctgaagaggaatggtatgtgattgatttgaaagatgataagagtttgatg |
315 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| |
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| T |
48250458 |
tgatgctagagacgtgattgcggggaaatcgaaagatttgaaagagaattctgaagaggagtggtctgtgattgacttgaaagatgataagagtttgatg |
48250359 |
T |
|
| Q |
316 |
aacaaggagaatttgaattctaagggaaaatcaagtcatggatcagctttgaaacatattaatggagcagcttcggtttccgggtttgtttcttctaaca |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||| ||||| |||| |
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| T |
48250358 |
aacaaggagaatttgaattctaagggaaaatcaagtcatggatcagctttgaaacagattaaaggagcagcttcggtttttgggtttgtatcttcaaaca |
48250259 |
T |
|
| Q |
416 |
agcatgaaaagagcatatttgattcacctcctttgcataaacaacaaagtgaagggaaaa |
475 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
48250258 |
aacatgaaaagagtatatttgattcacctcctttgcataaacaacaaagtgatgggaaaa |
48250199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 603 - 721
Target Start/End: Complemental strand, 27892811 - 27892693
Alignment:
| Q |
603 |
tgtttacagtttttcggaattatatgcatgtaatatgtatgatttgaatcagtttccttttaaccaaattaataaatatgtgtttacctacaataatcca |
702 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||| |
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| T |
27892811 |
tgtttaccgtttttcggatttatatgcatgtaatatgtatgatttgaatcagtttccttttaaccaaattaacaaatctgtgtttgcctacaataatccg |
27892712 |
T |
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| Q |
703 |
ttccactacaacaaaattt |
721 |
Q |
| |
|
|||| |||||||||||||| |
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| T |
27892711 |
ttcctctacaacaaaattt |
27892693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 134; Significance: 2e-69; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 493 - 721
Target Start/End: Complemental strand, 12075215 - 12074987
Alignment:
| Q |
493 |
tcagatcattttggaaatgtaattttataatccatcaagcacaagtactttagaatcttcgtaatctaagttaacaagcatgatagacccatcttgaatt |
592 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||| |||| | |||||||||||||||||| ||| ||||||||||| |||||| ||||||||||||||||| |
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|
| T |
12075215 |
tcagatcgttttggaaatgtaatttta-aatccttcaaacgcaagtactttagaatctttgtactctaagttaactagcatggtagacccatcttgaatt |
12075117 |
T |
|
| Q |
593 |
tcgtatgttat-gtttacagtttttcggaattatatgcatgtaatatgtatgatttgaatcagtttccttttaaccaaattaataaatatgtgtttacct |
691 |
Q |
| |
|
||||||||||| ||||| ||| || ||| |||||| ||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||| ||| |
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|
| T |
12075116 |
tcgtatgttatcgtttatggttatttggatttatatacatgtaatatgtatgatttgaatcagtttccttttaaacgaattaacaaatatgtgtttgcct |
12075017 |
T |
|
| Q |
692 |
acaataatccattccactacaacaaaattt |
721 |
Q |
| |
|
||||||||||||||| ||| |||||||||| |
|
|
| T |
12075016 |
acaataatccattcctctataacaaaattt |
12074987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 605 - 662
Target Start/End: Original strand, 875454 - 875511
Alignment:
| Q |
605 |
tttacagtttttcggaattatatgcatgtaatatgtatgatttgaatcagtttccttt |
662 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||| |
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|
| T |
875454 |
tttacagtttttcggatttatatgcatgtaatatgtatgatttgaattagtatccttt |
875511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 493 - 550
Target Start/End: Original strand, 29737498 - 29737555
Alignment:
| Q |
493 |
tcagatcattttggaaatgtaattttataatccatcaagcacaagtactttagaatct |
550 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| | |||| ||||||||| ||||| |
|
|
| T |
29737498 |
tcaggtcattttggaaatgtaattttataatccataatgcacgagtactttaaaatct |
29737555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 7e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 605 - 728
Target Start/End: Complemental strand, 272756 - 272633
Alignment:
| Q |
605 |
tttacagtttttcggaattatatgcatgtaatatgtatgatttgaatcagtttccttttaaccaaattaataaatatgtgtttacctacaataatccatt |
704 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||| || |
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|
| T |
272756 |
tttacagtttttcggatttatatgcatgtaatatgtatgatttgaattagtatccttttaaccaaattaataaatatgtgtttgcctacaataatccgtt |
272657 |
T |
|
| Q |
705 |
ccactacaacaaaattttccaaaa |
728 |
Q |
| |
|
| |||||||| ||||||||||| |
|
|
| T |
272656 |
tctttacaacaatattttccaaaa |
272633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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