View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18660_low_11 (Length: 332)
Name: NF18660_low_11
Description: NF18660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18660_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 25553168 - 25552854
Alignment:
| Q |
1 |
aatatgctttatgtgtgtaaccatagaactttgcttgatccactttatatatcacacactataaacaaaccactctcagcagtcacatatagcatgagca |
100 |
Q |
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| T |
25553168 |
aatatgctttatgtgtgtaaccatagaactttgcttgatccactttatatatcacacactataaacaaaccactctcagcagtcacatatagcatgagca |
25553069 |
T |
|
| Q |
101 |
tagtcaatgagattatttcccccattaaaacaacgcgattaacacgcgaccgagcaagagacagggattcgatggagaaaatgctttgtgaaggaaacct |
200 |
Q |
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| T |
25553068 |
tagtcaatgagattatttcccccattaaaacaacgcgattaacacgcgaccgagtaagagacagggattcgatggagaaaatgctttgtgaaggaaacct |
25552969 |
T |
|
| Q |
201 |
tgtggtatgtccagaaggaacaacttgtagagaaccttacttgctaaggtttagtcctttgtttgctgagctaactgatgatattgttcctgttgctgtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25552968 |
tgtggtatgtccagaaggaacaacttgtagagaaccttacttgctaaggtttagtcctttgtttgctgagctaactgatgatattgttcctgttgctgtt |
25552869 |
T |
|
| Q |
301 |
gatgttaaggttagt |
315 |
Q |
| |
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| T |
25552868 |
gatgttaaggttagt |
25552854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 270
Target Start/End: Complemental strand, 39975872 - 39975810
Alignment:
| Q |
208 |
tgtccagaaggaacaacttgtagagaaccttacttgctaaggtttagtcctttgtttgctgag |
270 |
Q |
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| T |
39975872 |
tgtcctgaaggaacaacatgtagagaaccatatttgttaaggtttagttcattgtttgctgag |
39975810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 290
Target Start/End: Complemental strand, 16147650 - 16147568
Alignment:
| Q |
208 |
tgtccagaaggaacaacttgtagagaaccttacttgctaaggtttagtcctttgtttgctgagctaactgatgatattgttcc |
290 |
Q |
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| T |
16147650 |
tgtcctgaaggaacaacttgtagggaaccttatttattaaggtttagttcactttttgctgaacttgctgatgagattgttcc |
16147568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 269
Target Start/End: Complemental strand, 38792346 - 38792285
Alignment:
| Q |
208 |
tgtccagaaggaacaacttgtagagaaccttacttgctaaggtttagtcctttgtttgctga |
269 |
Q |
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| T |
38792346 |
tgtccagaagggaccacttgtagagaaccttatttattaaggtttagctctttgttttctga |
38792285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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