View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18660_low_12 (Length: 329)

Name: NF18660_low_12
Description: NF18660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18660_low_12
NF18660_low_12
[»] chr2 (7 HSPs)
chr2 (19-182)||(22574438-22574601)
chr2 (17-150)||(22565077-22565210)
chr2 (161-238)||(22574206-22574283)
chr2 (257-302)||(22574384-22574429)
chr2 (265-302)||(11093746-11093783)
chr2 (268-300)||(2806463-2806495)
chr2 (268-304)||(40688600-40688636)
[»] chr7 (4 HSPs)
chr7 (265-302)||(21875586-21875623)
chr7 (265-304)||(32984175-32984214)
chr7 (265-302)||(47999855-47999892)
chr7 (254-302)||(32826520-32826568)
[»] chr4 (2 HSPs)
chr4 (254-302)||(29329770-29329818)
chr4 (265-302)||(4234243-4234280)
[»] chr1 (3 HSPs)
chr1 (254-302)||(7961778-7961826)
chr1 (265-302)||(45371788-45371825)
chr1 (268-304)||(40375276-40375312)
[»] scaffold0038 (1 HSPs)
scaffold0038 (268-302)||(23435-23469)
[»] chr8 (5 HSPs)
chr8 (268-302)||(32719569-32719603)
chr8 (268-302)||(34472372-34472406)
chr8 (265-302)||(7453427-7453464)
chr8 (268-297)||(35818139-35818168)
chr8 (268-304)||(1632401-1632437)
[»] chr6 (1 HSPs)
chr6 (268-302)||(28222937-28222971)
[»] chr5 (3 HSPs)
chr5 (265-303)||(3712025-3712063)
chr5 (268-300)||(8282822-8282854)
chr5 (254-302)||(19273160-19273208)
[»] chr3 (3 HSPs)
chr3 (268-302)||(15975369-15975403)
chr3 (265-302)||(32828516-32828553)
chr3 (254-302)||(15492166-15492214)


Alignment Details
Target: chr2 (Bit Score: 148; Significance: 4e-78; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 22574601 - 22574438
Alignment:
Q  19 agggacgttgaaaaaatatttggaaaagacaaaaaattgtatgcgagtgaaagttagaagcaggacatatactagaaaagagaggaagcaagcaacacaa 118  Q
    |||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22574601 agggacattgaaaaaatatttggagaagacaaaaaattatatgcgagtgaaagttagaagcaggacatatactagaaaagagaggaagcaagcaacacaa 22574502  T
Q  119 gattgaatttcatcactgaaccacgatgacaacaagcaattagtttaccatctttcaactcttt 182  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22574501 gattgaatttcatcattgaaccacgatgacaacaagcaattagtttaccatctttcaactcttt 22574438  T

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Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 17 - 150
Target Start/End: Complemental strand, 22565210 - 22565077
Alignment:
Q  17 aaagggacgttgaaaaaatatttggaaaagacaaaaaattgtatgcgagtgaaagttagaagcaggacatatactagaaaagagaggaagcaagcaacac 116  Q
    ||||| || ||||||||||||||||| |||||||||||||||||| || || ||||| |||||||||||||||||  ||||| |||||||||||||||||    
T  22565210 aaaggtacattgaaaaaatatttggagaagacaaaaaattgtatgtgaatgtaagttcgaagcaggacatatactgaaaaagtgaggaagcaagcaacac 22565111  T
Q  117 aagattgaatttcatcactgaaccacgatgacaa 150  Q
    ||||||||||||||||| ||||||||||||||||    
T  22565110 aagattgaatttcatcattgaaccacgatgacaa 22565077  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 161 - 238
Target Start/End: Complemental strand, 22574283 - 22574206
Alignment:
Q  161 gtttaccatctttcaactctttcacaaatataataaaatttgtattcaacgtccaaattaattagaggtcgactattt 238  Q
    |||||| |||||| |||| ||||  |||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  22574283 gtttacaatctttaaactatttcttaaatataataaaatttgtattcaacgtccaaattaatttgaggttgactattt 22574206  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 257 - 302
Target Start/End: Complemental strand, 22574429 - 22574384
Alignment:
Q  257 aaataccataatggttagagctcacacaatttaattatggaaaagt 302  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||    
T  22574429 aaatatcataatggttagagctcacacaatttaattatggagaagt 22574384  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 302
Target Start/End: Original strand, 11093746 - 11093783
Alignment:
Q  265 taatggttagagctcacacaatttaattatggaaaagt 302  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  11093746 taatggttagagctcacacaatttaattgtggagaagt 11093783  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 300
Target Start/End: Original strand, 2806463 - 2806495
Alignment:
Q  268 tggttagagctcacacaatttaattatggaaaa 300  Q
    ||||||||||||||||||||||||| |||||||    
T  2806463 tggttagagctcacacaatttaattgtggaaaa 2806495  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 304
Target Start/End: Original strand, 40688600 - 40688636
Alignment:
Q  268 tggttagagctcacacaatttaattatggaaaagtag 304  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  40688600 tggttagagctcacacaatttaattgtggagaagtag 40688636  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 302
Target Start/End: Original strand, 21875586 - 21875623
Alignment:
Q  265 taatggttagagctcacacaatttaattatggaaaagt 302  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21875586 taatggttagagctcacacaatttaattatggaaaagt 21875623  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 265 - 304
Target Start/End: Original strand, 32984175 - 32984214
Alignment:
Q  265 taatggttagagctcacacaatttaattatggaaaagtag 304  Q
    |||||||||||||||||||||||||||| |||| ||||||    
T  32984175 taatggttagagctcacacaatttaattgtggagaagtag 32984214  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 302
Target Start/End: Complemental strand, 47999892 - 47999855
Alignment:
Q  265 taatggttagagctcacacaatttaattatggaaaagt 302  Q
    |||||| |||||||||||||||||||||||||| ||||    
T  47999892 taatggctagagctcacacaatttaattatggagaagt 47999855  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 302
Target Start/End: Original strand, 32826520 - 32826568
Alignment:
Q  254 gtcaaataccataatggttagagctcacacaatttaattatggaaaagt 302  Q
    |||||||| | |||||| ||||||||||||||||||||| |||| ||||    
T  32826520 gtcaaatagcctaatggctagagctcacacaatttaattgtggagaagt 32826568  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 302
Target Start/End: Original strand, 29329770 - 29329818
Alignment:
Q  254 gtcaaataccataatggttagagctcacacaatttaattatggaaaagt 302  Q
    ||||| |||| |||||||||||||||||||||||||||| |||| ||||    
T  29329770 gtcaagtaccttaatggttagagctcacacaatttaattgtggagaagt 29329818  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 302
Target Start/End: Original strand, 4234243 - 4234280
Alignment:
Q  265 taatggttagagctcacacaatttaattatggaaaagt 302  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  4234243 taatggctagagctcacacaatttaattgtggaaaagt 4234280  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 302
Target Start/End: Complemental strand, 7961826 - 7961778
Alignment:
Q  254 gtcaaataccataatggttagagctcacacaatttaattatggaaaagt 302  Q
    |||||||| | || ||||||||||||||||||||||||| |||||||||    
T  7961826 gtcaaatagcctagtggttagagctcacacaatttaattgtggaaaagt 7961778  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 302
Target Start/End: Complemental strand, 45371825 - 45371788
Alignment:
Q  265 taatggttagagctcacacaatttaattatggaaaagt 302  Q
    |||| |||||||||||||||||||||||||||| ||||    
T  45371825 taatagttagagctcacacaatttaattatggagaagt 45371788  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 304
Target Start/End: Original strand, 40375276 - 40375312
Alignment:
Q  268 tggttagagctcacacaatttaattatggaaaagtag 304  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  40375276 tggttagagctcacacaatttaattgtggagaagtag 40375312  T

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Target: scaffold0038 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 302
Target Start/End: Complemental strand, 23469 - 23435
Alignment:
Q  268 tggttagagctcacacaatttaattatggaaaagt 302  Q
    |||||||||||||||||||||||||||||| ||||    
T  23469 tggttagagctcacacaatttaattatggagaagt 23435  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 302
Target Start/End: Original strand, 32719569 - 32719603
Alignment:
Q  268 tggttagagctcacacaatttaattatggaaaagt 302  Q
    ||||||||||||||||||||||||| |||||||||    
T  32719569 tggttagagctcacacaatttaattgtggaaaagt 32719603  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 302
Target Start/End: Complemental strand, 34472406 - 34472372
Alignment:
Q  268 tggttagagctcacacaatttaattatggaaaagt 302  Q
    ||||||||||||||||||||||||| |||||||||    
T  34472406 tggttagagctcacacaatttaattgtggaaaagt 34472372  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 302
Target Start/End: Complemental strand, 7453464 - 7453427
Alignment:
Q  265 taatggttagagctcacacaatttaattatggaaaagt 302  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  7453464 taatggttagagttcacacaatttaattatggagaagt 7453427  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 297
Target Start/End: Complemental strand, 35818168 - 35818139
Alignment:
Q  268 tggttagagctcacacaatttaattatgga 297  Q
    ||||||||||||||||||||||||||||||    
T  35818168 tggttagagctcacacaatttaattatgga 35818139  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 304
Target Start/End: Original strand, 1632401 - 1632437
Alignment:
Q  268 tggttagagctcacacaatttaattatggaaaagtag 304  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  1632401 tggttagagctcacacaatttaattgtggagaagtag 1632437  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 302
Target Start/End: Complemental strand, 28222971 - 28222937
Alignment:
Q  268 tggttagagctcacacaatttaattatggaaaagt 302  Q
    |||||||||||||||||||||||||||||| ||||    
T  28222971 tggttagagctcacacaatttaattatggagaagt 28222937  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 303
Target Start/End: Original strand, 3712025 - 3712063
Alignment:
Q  265 taatggttagagctcacacaatttaattatggaaaagta 303  Q
    |||||||||||||||||||||||||||| |||| |||||    
T  3712025 taatggttagagctcacacaatttaattgtggacaagta 3712063  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 268 - 300
Target Start/End: Complemental strand, 8282854 - 8282822
Alignment:
Q  268 tggttagagctcacacaatttaattatggaaaa 300  Q
    ||||||||||||||||||||||||||| |||||    
T  8282854 tggttagagctcacacaatttaattatcgaaaa 8282822  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 302
Target Start/End: Original strand, 19273160 - 19273208
Alignment:
Q  254 gtcaaataccataatggttagagctcacacaatttaattatggaaaagt 302  Q
    |||||||| | || ||| |||||||||||||||||||||||||| ||||    
T  19273160 gtcaaatagcctagtggctagagctcacacaatttaattatggagaagt 19273208  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 302
Target Start/End: Original strand, 15975369 - 15975403
Alignment:
Q  268 tggttagagctcacacaatttaattatggaaaagt 302  Q
    |||||||||||||||||||||||||||||| ||||    
T  15975369 tggttagagctcacacaatttaattatggagaagt 15975403  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 302
Target Start/End: Complemental strand, 32828553 - 32828516
Alignment:
Q  265 taatggttagagctcacacaatttaattatggaaaagt 302  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  32828553 taatggctagagctcacacaatttaattgtggaaaagt 32828516  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 302
Target Start/End: Complemental strand, 15492214 - 15492166
Alignment:
Q  254 gtcaaataccataatggttagagctcacacaatttaattatggaaaagt 302  Q
    |||||||| | || ||| ||||||||||||||||||||| |||||||||    
T  15492214 gtcaaatagcctagtggctagagctcacacaatttaattgtggaaaagt 15492166  T

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