View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18660_low_14 (Length: 274)
Name: NF18660_low_14
Description: NF18660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18660_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 3e-91; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 17 - 266
Target Start/End: Original strand, 1336324 - 1336563
Alignment:
| Q |
17 |
aattagttaattaatttttggtgacaaagctaattggtttatataatgagaatgtaagcttatgtatgtatttacatttacatacattagtcgaaatttt |
116 |
Q |
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| T |
1336324 |
aattagttaattaatttttggtgacaaagctaattggtttatataatgagaatgtaagcttatgtat----ttacatttacatac------cgaaatttt |
1336413 |
T |
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| Q |
117 |
agatatagtnnnnnnnntattgaatgaaacaaagtcttactttgtgatagcttgacaatatcttcttctggaagaaaaactttgttaaagttttgaccac |
216 |
Q |
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| T |
1336414 |
agataaagtaaaaaaaatattgaatgaaacaaagtcttactttgtgatagcttgataatatcttcttctggaacaaatactttgttaaagttttgaccac |
1336513 |
T |
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| Q |
217 |
ttttgagttcccatagtgatatcaactcattttgtgatatgatattcttc |
266 |
Q |
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| T |
1336514 |
ttttgagttcccatagtgatatcaactcattttgtgatatgatattcttc |
1336563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 147 - 265
Target Start/End: Original strand, 1320682 - 1320800
Alignment:
| Q |
147 |
aaagtcttactttgtgatagcttgacaatatcttcttctggaagaaaaactttgttaaagttttgaccacttttgagttcccatagtgatatcaactcat |
246 |
Q |
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| T |
1320682 |
aaagtattactttgtgatagcttgacaatatcttcctctggaacaaaaactttatgaaatttttgaccacttttgagctcccatagtgatatcaactcat |
1320781 |
T |
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| Q |
247 |
tttgtgatatgatattctt |
265 |
Q |
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| T |
1320782 |
tttgtgatatgatattctt |
1320800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 149 - 266
Target Start/End: Complemental strand, 1264218 - 1264101
Alignment:
| Q |
149 |
agtcttactttgtgatagcttgacaatatcttcttctggaagaaaaactttgttaaagttttgaccacttttgagttcccatagtgatatcaactcattt |
248 |
Q |
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| T |
1264218 |
agtcttactttgtgatagcttgacaatatcttcttctggagcaaaaactttgttaaggatttgaccatttttaagctcccatagtgatatcaactcattt |
1264119 |
T |
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| Q |
249 |
tgtgatatgatattcttc |
266 |
Q |
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| T |
1264118 |
tgtgttataaaattcttc |
1264101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 265
Target Start/End: Complemental strand, 1253575 - 1253519
Alignment:
| Q |
209 |
ttgaccacttttgagttcccatagtgatatcaactcattttgtgatatgatattctt |
265 |
Q |
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| T |
1253575 |
ttgaccatttttaagctcccatagttatatcaactcattttgtgttataaaattctt |
1253519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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