View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18660_low_22 (Length: 233)
Name: NF18660_low_22
Description: NF18660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18660_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 32843763 - 32843541
Alignment:
| Q |
1 |
ttgcagactgctgttgttagatataagaagaagtttccttggtctcttttgaagccaaatcttcaggttggtgtaaagtttgtgtctttcttgttttttc |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32843763 |
ttgcagactgctgttgttaaatataagaagaagtttccttggtctcttttgaagccaaatcttcaggttggtgtaaagtttgtgcctttcttgttttttc |
32843664 |
T |
|
| Q |
101 |
tcaatcgggttttgttttcttagattggtttcttgatgctatnnnnnnnnnnnnnnnnnnnnnnaggttgatttggtttcaacaattcacatagctgata |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
32843663 |
tcaatcgggttttgttttcttagattggtttcttgatgctatttgttgttgttgttgttgttgtaggttgatttgatttcaacaattcacatagctgatg |
32843564 |
T |
|
| Q |
201 |
aaaagtatgtattgtttatcttg |
223 |
Q |
| |
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|| |||||||||||||||||||| |
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| T |
32843563 |
aagagtatgtattgtttatcttg |
32843541 |
T |
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