View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18660_low_23 (Length: 232)

Name: NF18660_low_23
Description: NF18660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18660_low_23
NF18660_low_23
[»] chr1 (2 HSPs)
chr1 (12-216)||(27741673-27741877)
chr1 (137-215)||(27745191-27745269)
[»] chr7 (1 HSPs)
chr7 (133-216)||(7392283-7392368)
[»] chr6 (2 HSPs)
chr6 (129-174)||(12311376-12311421)
chr6 (39-88)||(18805272-18805321)
[»] chr2 (4 HSPs)
chr2 (137-215)||(22297435-22297513)
chr2 (137-215)||(45523699-45523777)
chr2 (143-215)||(22538573-22538645)
chr2 (135-216)||(37516023-37516106)
[»] chr3 (2 HSPs)
chr3 (137-214)||(54983688-54983765)
chr3 (143-215)||(47191407-47191479)
[»] chr8 (1 HSPs)
chr8 (143-215)||(10970300-10970372)


Alignment Details
Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 12 - 216
Target Start/End: Complemental strand, 27741877 - 27741673
Alignment:
Q  12 agaacctgtgttttattttgtactaggactatttttacatttcgtgtatattacaagggttgtttcaataattaaccnnnnnnnnattcaagtaacacta 111  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||    
T  27741877 agaatctgtgttttattttgtactaggactatttttacatttcgtgtatattacaagggttgtttcaataattaaccatttttttattcaagtaacacta 27741778  T
Q  112 atggccgnnnnnnnnccttcttcaagtagtttagtggctataattcatattttaaggtgaatagatgaggcgttcggggtacgaaccccactccctgcat 211  Q
    |||||||         |||||||||||| | ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| | | ||||||||    
T  27741777 atggccgtttttttttcttcttcaagtaatctagtggctagaattcatattttaaggtgaatagatgaggcgtccggggtacgaacctcgccccctgcat 27741678  T
Q  212 ataac 216  Q
    |||||    
T  27741677 ataac 27741673  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 27745269 - 27745191
Alignment:
Q  137 gtagtttagtggctataattcatattttaaggtgaatagatgaggcgttcggggtacgaaccccactccctgcatataa 215  Q
    ||||||||||||||| || |||  || ||||||||||| ||| || || |||||| ||||||||  |||||||||||||    
T  27745269 gtagtttagtggctagaactcactttataaggtgaataaatggggtgtccggggttcgaaccccgatccctgcatataa 27745191  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 133 - 216
Target Start/End: Original strand, 7392283 - 7392368
Alignment:
Q  133 tcaagtagtttagtggctataattcatatttt--aaggtgaatagatgaggcgttcggggtacgaaccccactccctgcatataac 216  Q
    ||||||||||||||||||||||||||||||||  ||||||||||  || || ||||||||| | |||||||  | |||||||||||    
T  7392283 tcaagtagtttagtggctataattcatatttttcaaggtgaataagtggggtgttcggggttcaaaccccaacctctgcatataac 7392368  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 174
Target Start/End: Original strand, 12311376 - 12311421
Alignment:
Q  129 ttcttcaagtagtttagtggctataattcatattttaaggtgaata 174  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||    
T  12311376 ttcttcaagtagtttagtggctagaattcacattttaaggtgaata 12311421  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 18805321 - 18805272
Alignment:
Q  39 actatttttacatttcgtgtatattacaagggttgtttcaataattaacc 88  Q
    |||||||||| ||||||||||| ||||| ||||| |||||||||||||||    
T  18805321 actatttttagatttcgtgtatgttacatgggttatttcaataattaacc 18805272  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 22297435 - 22297513
Alignment:
Q  137 gtagtttagtggctataattcatattttaaggtgaatagatgaggcgttcggggtacgaaccccactccctgcatataa 215  Q
    ||||||||||||||| |||| | ||| ||||||||||| ||| || || |||||| ||||||||   ||||||||||||    
T  22297435 gtagtttagtggctagaattaacattataaggtgaataaatggggtgtccggggttcgaacccctgcccctgcatataa 22297513  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 45523777 - 45523699
Alignment:
Q  137 gtagtttagtggctataattcatattttaaggtgaatagatgaggcgttcggggtacgaaccccactccctgcatataa 215  Q
    |||||||||||| || ||||||  || |||||||||||| ||||| ||| ||||| ||||||||   ||||||||||||    
T  45523777 gtagtttagtggttagaattcaccttataaggtgaataggtgaggtgtttggggttcgaaccccgacccctgcatataa 45523699  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 215
Target Start/End: Complemental strand, 22538645 - 22538573
Alignment:
Q  143 tagtggctataattcatattttaaggtgaatagatgaggcgttcggggtacgaaccccactccctgcatataa 215  Q
    ||||||||| ||||||  || |||||||||||  ||||| ||||||| | |||||||||  ||||||||||||    
T  22538645 tagtggctagaattcaccttataaggtgaataagtgaggtgttcgggattcgaaccccaacccctgcatataa 22538573  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 216
Target Start/End: Complemental strand, 37516106 - 37516023
Alignment:
Q  135 aagtagtttagtggctataattcata--ttttaaggtgaatagatgaggcgttcggggtacgaaccccactccctgcatataac 216  Q
    ||||||||||||||||| ||||||||  |||||||||||||| ||   | ||||| ||| |||||||||  |||| ||||||||    
T  37516106 aagtagtttagtggctagaattcatattttttaaggtgaataaatagagtgttcgaggttcgaaccccaacccctacatataac 37516023  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 214
Target Start/End: Original strand, 54983688 - 54983765
Alignment:
Q  137 gtagtttagtggctataattcatattttaaggtgaatagatgaggcgttcggggtacgaaccccactccctgcatata 214  Q
    ||||||||||||||| ||||||  || ||||||||||| ||| || || |||||| ||||||||   |||||||||||    
T  54983688 gtagtttagtggctagaattcaccttataaggtgaataaatggggtgtccggggttcgaaccccgacccctgcatata 54983765  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 215
Target Start/End: Complemental strand, 47191479 - 47191407
Alignment:
Q  143 tagtggctataattcatattttaaggtgaatagatgaggcgttcggggtacgaaccccactccctgcatataa 215  Q
    ||||||||| ||||||| || |||||||||||  || || ||||||||| ||||| |||  ||||||||||||    
T  47191479 tagtggctagaattcatcttataaggtgaataagtggggtgttcggggttcgaactccagcccctgcatataa 47191407  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 215
Target Start/End: Complemental strand, 10970372 - 10970300
Alignment:
Q  143 tagtggctataattcatattttaaggtgaatagatgaggcgttcggggtacgaaccccactccctgcatataa 215  Q
    ||||||||| ||||||| || |||||||||||  || || |||||||||  ||||||||  ||||||||||||    
T  10970372 tagtggctagaattcatcttataaggtgaataagtggggtgttcggggtttgaaccccagcccctgcatataa 10970300  T

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