View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18660_low_3 (Length: 509)
Name: NF18660_low_3
Description: NF18660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18660_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 113 - 495
Target Start/End: Original strand, 36886103 - 36886485
Alignment:
| Q |
113 |
gttgcaaatattatttgatccttatttggaaaagttcagattgcattcatggtttgctttcacagatccaaaaaatttcaaggattcaagtatctaaagt |
212 |
Q |
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| T |
36886103 |
gttgcacatattatttgatccttatttggaaaagttcagattgcattcatggtttgctttcacagatccataaaatttcaaggattcaagtatctaaagt |
36886202 |
T |
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| Q |
213 |
tttgtactggtttagtcacctattcattttatttaaatcgtactgtgatatcaaaaaatccaaaagaagaagccatacatttctttgagattatctaagc |
312 |
Q |
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| T |
36886203 |
tttgtactggtttagtcacctattcattttatttaaatcgtactgtgatatcaaaaaatccaaaagaagaagccatacatttctttgagattatctaagc |
36886302 |
T |
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| Q |
313 |
cagtaaatacgtcaccaatgggtccaattaagaaattgtggcttaaattcctgcaacacaagataaaaaagatgattgtacttgcacagctactagtaaa |
412 |
Q |
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| T |
36886303 |
cagtaaatacgtcaccaatgggtccaattaagaaattgtggcttaaattcctgcaacacaagataaaaaagatgattgtacttgcacagctactagtaaa |
36886402 |
T |
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| Q |
413 |
gcgcccaatcattataatatatcatatgctcaaaagagacgaaaaaatgtaaacattttattttcaactgataaagacattat |
495 |
Q |
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| T |
36886403 |
gcgcccaatcattataatatatcatatgctcaaaagagatgaaaaaatgtaaacattttattttcaactgataaagacattat |
36886485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 36886003 - 36886036
Alignment:
| Q |
13 |
aaaatatagcaataaagaggagtacatatctatg |
46 |
Q |
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| T |
36886003 |
aaaatatagcaataaagaggagtacatatctatg |
36886036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 278 - 373
Target Start/End: Original strand, 22556739 - 22556834
Alignment:
| Q |
278 |
gaagaagccatacatttctttgagattatctaagccagtaaatacgtcaccaatgggtccaattaagaaattgtggcttaaattcctgcaacacaa |
373 |
Q |
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| T |
22556739 |
gaagaagacatacatttctttgagattatctaagcctgtgaacacattgccaattggtccatataagaaattgtggcttaaattcctgcaagacaa |
22556834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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