View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18660_low_4 (Length: 490)
Name: NF18660_low_4
Description: NF18660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18660_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 446; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 19 - 480
Target Start/End: Original strand, 33495077 - 33495538
Alignment:
| Q |
19 |
aaatatccaaagaaagtcaacctattttaatagtaaaattcacttaacattcccataataataaatagcatgttgttaacaattgtcaagatattgacaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33495077 |
aaatatccaaagaaagtcaacctattttaatagtaaaattcacttaacattcccataataataaatagcatgttgttaacaattgtcaagatattgacaa |
33495176 |
T |
|
| Q |
119 |
tgaattatatgatcagttttaaataacttaaacaacagcagttgttgtcacatatttgcttctatattgcttgctcaagtcttctatgttggtatcatca |
218 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33495177 |
ttcattatatgatcagttttaaataacttaaacaacagcagttgctgtcacatatttgcttctatattgcttgctcaagtcttctatgttggtatcatca |
33495276 |
T |
|
| Q |
219 |
ctagtattgttgaggaaactagaaaaccactcaactgaaagtttaggaattcgttcaagtgtctgtctatccacataatataatccaaatcttacattat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33495277 |
ctagtattgttgaggaaactagaaaaccactcaactgaaagtttaggaattcgttcaagtgtctgtctatccacataatataatccaaatcttacattat |
33495376 |
T |
|
| Q |
319 |
atccactattccattcaaagttgtcaaacaatgaccataccatatatcctcttacatctgcaccttttctgcacataatcaaatttagtctcagtcaaca |
418 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33495377 |
atccactattccattcaaagttgtcaaacaacgaccataccatatatcctcttacatctgcaccttttctgcacataatcaaatttagtctcagtcaaca |
33495476 |
T |
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| Q |
419 |
gacaaactataactaaaaacattcataaaaaacaaggttgctactcatatatttgtcttcat |
480 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33495477 |
gacaaactataactaaaaacattcataaaaaacaaggttgctactcatatatttgtcttcat |
33495538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 20 - 480
Target Start/End: Complemental strand, 33520980 - 33520516
Alignment:
| Q |
20 |
aatatccaaagaaagtcaacctattttaatagtaaaattcacttaacattcccataataa--taaatagcatgttgttaacaattgtcaag--atattga |
115 |
Q |
| |
|
|||||||||| | | ||||||||| |||||||| |||||||| ||| ||||| |||||| ||||||| ||||||||||||||| |||| ||||||| |
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| T |
33520980 |
aatatccaaacagaatcaacctatgttaatagtgaaattcacataaacttcccttaataaaataaatagtatgttgttaacaattatcaattaatattga |
33520881 |
T |
|
| Q |
116 |
caatgaattatatgatcagttttaaataa---cttaaacaacagcagttgttgtcacatatttgcttctatattgcttgctcaagtcttctatgttggta |
212 |
Q |
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||||||||| ||||||| ||| |||||| |||| ||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
33520880 |
gaatgaattacatgatcattttcaaataataacttagacaacagcagttgtt---acatatttgcttctatacttcttgctcaagtcttctatgttggta |
33520784 |
T |
|
| Q |
213 |
tcatcactagtattgttgaggaaactagaaaaccactcaactgaaagtttaggaattcgttcaagtgtctgtctatccacataatataatccaaatctta |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||| || |
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| T |
33520783 |
tcatcactagtattgttgaggaaactagaaaaccactcaactgaaagtttaggaatccgttcaagtgtctgtctatccacataataaagtccaaattttt |
33520684 |
T |
|
| Q |
313 |
cattatatccactattccattcaaagttgtcaaacaatgaccataccatatatcctcttacatctgcaccttttctgcacataatcaaatttagtctcag |
412 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||| | |
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| T |
33520683 |
tatcatatccactattccattcaaagttgtcaaacaatgaccataccatgtatcctcttacatcggcaccttttctgcacataatcaaatttagcctctg |
33520584 |
T |
|
| Q |
413 |
tcaacagacaaactataactaaaaacattcataaaaaacaaggttgctactcatatatttgtcttcat |
480 |
Q |
| |
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|||||| ||||| ||||| | |||||||||||| |||||||||||||||||||||||||||| ||||| |
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|
| T |
33520583 |
tcaacaaacaaagtataattgaaaacattcatagaaaacaaggttgctactcatatatttgttttcat |
33520516 |
T |
|
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