View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18660_low_5 (Length: 475)
Name: NF18660_low_5
Description: NF18660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18660_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 16 - 464
Target Start/End: Original strand, 20488111 - 20488556
Alignment:
| Q |
16 |
cttgaatctgcagtgctagagcttctgaaatgactaatgctgcttctcctccttctcctaccaccaggactctcatcttcatctttcatggattgtgaac |
115 |
Q |
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| T |
20488111 |
cttgaatctgcagtgctagagcttctgaaatgactaatgctgcttctcctccttctcctaccaccaggactctcatcttcatctttcatggattgtgaac |
20488210 |
T |
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| Q |
116 |
ttgattttgatttcttcttcttcgatgttgattgattgaagagagaattcaagaaacttgcaagtctaccacctggtgagctaggttgtttgttgtgttt |
215 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20488211 |
ttgattttgatttct---tcttcgatgttgattgattgaagagagaattcaagaaacttgcaagtctaccacctggtgagctaggttgtttgttgtgttt |
20488307 |
T |
|
| Q |
216 |
cttctctttcatttgtttctgatcaattcctccatgaaattgttgtggaagtaagcttctcattggcatgtctaagcttattctacctttgtatccattc |
315 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20488308 |
cttctctttcatttgtttctgatcaattccaccatgaaattgttgtggaagtaagcttctcattggcatgtctaagcttattctacctttgtatccattc |
20488407 |
T |
|
| Q |
316 |
ctttcttctctcataatcttttgtgtgaaagttgagctattattgtatccaattacttcattgtatcctgagaagtatcttgatgcttcaaacacatcaa |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
20488408 |
ctttcttctctcataatcttttgtgtgaaagttgagctattattgtatccaataacttcattgtatcctgagaagtatcttgatgcttcgaacacatcaa |
20488507 |
T |
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| Q |
416 |
gctcaccagaatcatttcttctgtggaaggatttcttattgtggttcat |
464 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20488508 |
gctcaccagaatcatttcttctgtggaaggatttcttattgtggttcat |
20488556 |
T |
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