View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18660_low_9 (Length: 363)
Name: NF18660_low_9
Description: NF18660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18660_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 213 - 315
Target Start/End: Original strand, 29262621 - 29262720
Alignment:
| Q |
213 |
agcataaaaacgtaactcatattaaacaagtagttttgttcctttcctctctcgagttcatggaacttgggaagaaaatagttgatcaagttacatttta |
312 |
Q |
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| T |
29262621 |
agcataaaaacgtaactcatatgaaac---tagtttatttcctttcctctctcgagttcatggaacttgggaagaaaatagttgatcaagttacatttta |
29262717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 129 - 179
Target Start/End: Original strand, 29262510 - 29262560
Alignment:
| Q |
129 |
taaaggtcatcagaactttccctttcttttttaaaaaaggtcaagtatttt |
179 |
Q |
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| T |
29262510 |
taaaggtcatcaaaactttccctttcttttctaataaaggtcaagtatttt |
29262560 |
T |
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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 207 - 301
Target Start/End: Original strand, 27613189 - 27613279
Alignment:
| Q |
207 |
ctctcgagcataaaaacgtaactcatattaaacaagtagttttgttcctttcctctctcgagttcatggaacttgggaagaaaatagttgatcaa |
301 |
Q |
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| T |
27613189 |
ctctcgagcataaaaacgtaactcat--taaataagtaaatttgttcctttcctgtc--gagctcatggaacttgggaagaaaatagttgatcaa |
27613279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 107 - 172
Target Start/End: Original strand, 27613062 - 27613127
Alignment:
| Q |
107 |
ttaaattaaccatgctacaatataaaggtcatcagaactttccctttcttttttaaaaaaggtcaa |
172 |
Q |
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| T |
27613062 |
ttaaattaaccatgctacaatataaaggtaatcagaactttacttttctttttcaaaaaaggtcaa |
27613127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 26847413 - 26847377
Alignment:
| Q |
31 |
aggtcttaattttggcatatctattaccccaaatcat |
67 |
Q |
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| T |
26847413 |
aggtctttattttggcatatctattgccccaaatcat |
26847377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 219 - 281
Target Start/End: Original strand, 3062010 - 3062072
Alignment:
| Q |
219 |
aaaacgtaactcatattaaacaagtagttttgttcctttcctctctcgagttcatggaacttg |
281 |
Q |
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| T |
3062010 |
aaaatgtaattcatattaaacaagtcgttttgttcctttcctctttcgggttcaaggaacttg |
3062072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 5084348 - 5084301
Alignment:
| Q |
15 |
atatacacatttgtttaggtcttaattttggcatatctattaccccaa |
62 |
Q |
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| T |
5084348 |
atatacaaatttgttcagatctttattttggcatatctattaccccaa |
5084301 |
T |
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