View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18661_high_1 (Length: 706)
Name: NF18661_high_1
Description: NF18661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18661_high_1 |
 | |
|
| [»] scaffold0598 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0598 (Bit Score: 544; Significance: 0; HSPs: 1)
Name: scaffold0598
Description:
Target: scaffold0598; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 14 - 688
Target Start/End: Complemental strand, 6131 - 5454
Alignment:
| Q |
14 |
atattggttttagatattgaattttgcttctctttaagaactcatgttcgattcttgttagatagattaatttaacttctttnnnnnnnnnnnnnnnnnt |
113 |
Q |
| |
|
|||||||||||| ||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
6131 |
atattggttttaaatattaaattttacttctctttaagagctcatgttcgattcttgttagatagattaatttaacttctttaaaaaaaataaaaa---t |
6035 |
T |
|
| Q |
114 |
gcatacaagtccctaaagacccgcagggagagccccgcacataagtccctatgcctttaatgtactttgtcctaaagaccgataaatgatggggatcact |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6034 |
gcatacaagtccctaaagacccgcagggagagccccgcacatatgtccctatgcctttaatgtactttgtcctaaagaccgataaatgatggggatcact |
5935 |
T |
|
| Q |
214 |
atggtgtagcttttctttgaagaaaggagtttatagcatagccaaagtctcctctacggtctaaaataaagggtatgacaatatgattaaattaaatata |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5934 |
atggtgtagcttttctttgaagaaaggagtttatagcatagccaaagtctcctctacggtctaaaataaagggtatgacaatatgattaaattaaatata |
5835 |
T |
|
| Q |
314 |
tgtaggaggagtgtgattgcaatgatcaaattagttgctcttttgttgtgnnnnnnnnnnct------atgtaaagaagatacttgcttttgaattctcg |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
5834 |
tgtaggaggagtgtgattgcaatgatcaaattagttgctcttttgttgtgttttttttttctttttatatgtaaagaagatacttgcttttgaattctcg |
5735 |
T |
|
| Q |
408 |
taaccaaataaggggacaaataagctcttataaaaatgattggtcgcttatttaggtttctgtagagtaacccaatggcccatatcaactcattatgcct |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5734 |
taaccaaataaggggacaaataagctcttataaaaatgattggtcgcttatttaggtttctgtagagtaacccaatggcccatatcaactcattatgcct |
5635 |
T |
|
| Q |
508 |
ttggtaccatcggccaccaggttcagtcttcaatatattttgccacccaaagcaaattattcgtcaatcttcattagaaagcacactttcatgtgacgcc |
607 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5634 |
ttggtgccatcggccaccaggttcagtcttcaatatattttgccacccaaagcaaattattcgtcaatcttcattagaaagcacactttcatgtgacgcc |
5535 |
T |
|
| Q |
608 |
aactcaaagtggatggtccatggatttgaagacaaaagctgttaaaggtttgatcgtattaattaaatgctttgagtgcta |
688 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5534 |
aactcaaagtggatggtccatggattggaagacaaaagctgttaaaggtttgatcgtattaattaaatgctttgagtgcta |
5454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University