View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18661_high_15 (Length: 304)
Name: NF18661_high_15
Description: NF18661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18661_high_15 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 11 - 286
Target Start/End: Complemental strand, 23411146 - 23410871
Alignment:
| Q |
11 |
catcatcactagtagtgaaagtgagacaccgaagatgcaaggtttttaatgatggcaagttcaacaattttggtattgttgtcttaccactatttgagcc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23411146 |
catcatcactagtagtgaaagtgagacaccgaagatgcaaggtttttaatgatggcaagttcaacaattttggtattgttgtcttaccactatttgagcc |
23411047 |
T |
|
| Q |
111 |
atatatctgccaaaagccaagcttaagatatgtcaaagaacgaccgtaaaatatggaagggggcaattcaagatcactaattttccttattctggcatag |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23411046 |
atatatctgccaaaagccaagcttaagatatgtcaaagaacgactgtaaaatatggaagggggcaattcaagatcactaattttccttattctggcatag |
23410947 |
T |
|
| Q |
211 |
actgtgagttgctgcatattatgtgacaatgcagcatatctcatgacctctaggagtgtagttttaggctcaaaat |
286 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23410946 |
actgtgagttgctgcatattatgtgacgatgcagcatatctcatgacctctaggagtgtagttttaggctcaaaat |
23410871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 11 - 278
Target Start/End: Original strand, 23273119 - 23273386
Alignment:
| Q |
11 |
catcatcactagtagtgaaagtgagacaccgaagatgcaaggtttttaatgatggcaagttcaacaattttggtattgttgtcttaccactatttgagcc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||| ||||| ||||||||||||||||| ||||||| | |||||||||||||||||||||| |
|
|
| T |
23273119 |
catcatcactagtagtgaaagtgagacaccacaaatgcaaagttttcaatgatggcaagttcaaggattttggaaacattgtcttaccactatttgagcc |
23273218 |
T |
|
| Q |
111 |
atatatctgccaaaagccaagcttaagatatgtcaaagaacgaccgtaaaatatggaagggggcaattcaagatcactaattttccttattctggcatag |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||| | |||||||| |
|
|
| T |
23273219 |
atatatctgccaaaagccaagcttaagatatgtcaaagaacgactgtaaaatatcgaagggggcaattcaagatcactaatttgccttactttggcatag |
23273318 |
T |
|
| Q |
211 |
actgtgagttgctgcatattatgtgacaatgcagcatatctcatgacctctaggagtgtagttttagg |
278 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23273319 |
actgtgagttgctgcatattatgtgacgatgcagcatatctcatgacctctaggagtgtagttttagg |
23273386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University