View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18661_high_21 (Length: 238)
Name: NF18661_high_21
Description: NF18661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18661_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 18506825 - 18506601
Alignment:
| Q |
1 |
cacaaacaatgagaccaccatctttagatgcagtgattccaagcaaagaagaactatctatatgcttccaattctcccaatttccatttctaaccattct |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
18506825 |
cacaaacaatgagaccaccatctttagatgtagtgattccaagcaaagaagagctatctatatgcttccaattctcccaattttcattcctaaccattct |
18506726 |
T |
|
| Q |
101 |
tttaatccatccatctcttgtagctgtatatagaacaccatctttatccacacaaacatcttctggttgtttcagaaatccttctccaagtttaatcaca |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18506725 |
tttaatccaaccatctcttgtagctgtatatagaacaccatctttatcaacacaaacatcttctggttgtttcagaaatccttctccaagtttaatcaca |
18506626 |
T |
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| Q |
201 |
ctctattaagaaataatatcattaa |
225 |
Q |
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||||||||||||||||||| ||||| |
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| T |
18506625 |
ctctattaagaaataatataattaa |
18506601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 18513323 - 18513124
Alignment:
| Q |
1 |
cacaaacaatgagaccaccatctttagatgcagtgattccaagcaaagaagaactatctatatgcttccaattctcccaatttccatttctaaccattct |
100 |
Q |
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|
|||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
18513323 |
cacacacaatgagaccaccatctttagatgtagtgattccaagcaaagaagagctatctatatgcttccaattctcccaattttcattcctaaccattct |
18513224 |
T |
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| Q |
101 |
tttaatccatccatctcttgtagctgtatatagaacaccatctttatccacacaaacatcttctggttgtttcagaaatccttctccaagtttaatcaca |
200 |
Q |
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||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
18513223 |
tttaatccaaccatctcttgtagctgtatatagaacaccatttttatcaacacaaacatcttctggttgtttcagaaatccttctccgagtttaatcaca |
18513124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 18486974 - 18486775
Alignment:
| Q |
1 |
cacaaacaatgagaccaccatctttagatgcagtgattccaagcaaagaagaactatctatatgcttccaattctcccaatttccatttctaaccattct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
18486974 |
cacaaacaatgagaccaccatctttagatgttgtgattccaagcaaagaagagctatctatatgcttccaattctcccaatttccattcctaaccattct |
18486875 |
T |
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| Q |
101 |
tttaatccatccatctcttgtagctgtatatagaacaccatctttatccacacaaacatcttctggttgtttcagaaatccttctccaagtttaatcaca |
200 |
Q |
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||||||||| ||||||||||| |||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
18486874 |
tttaatccaaccatctcttgttgctgtatataaaataccatctttatcaacacaaacatcttctggttgtttcagaaatccttctccgagtttaatcaca |
18486775 |
T |
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