View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18661_high_4 (Length: 459)
Name: NF18661_high_4
Description: NF18661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18661_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 19 - 453
Target Start/End: Original strand, 19567709 - 19568143
Alignment:
| Q |
19 |
cctctaccactaccttccaagtgctcataactacttctacttgaaaaacaacacttgaataagcttgtaaatgagttagaagatgacttttttgctccca |
118 |
Q |
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| T |
19567709 |
cctctcccactaccttccaagtgctcataactacttctactcgaaaaacaacacttgaataagcttgtaaatgagttagaagatgacttttttgctccca |
19567808 |
T |
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| Q |
119 |
tattgactcttaagtcttaacacttggtaacttacttactacaccccctttaatgtttttgaaggatatttagatgcttgagctataagctgattttcta |
218 |
Q |
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| T |
19567809 |
tattgagtcttaagtcttaacacttggtaacttactcactacaccccctttaatgtttttgaaggatatttagatgcttgaggtataagctgattttcta |
19567908 |
T |
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| Q |
219 |
catatttatagagtggtataccacatggtttcacaagattactattgtttcatatcaaaagtaaggattgcatgaatgtgacacgtaacatatgaagtga |
318 |
Q |
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| T |
19567909 |
catatttatagagttgtataccacatggtttcacaagattactattgtttcatatcaaaagtaaggattgcatgaatgtgacacgtaacatatgaagtga |
19568008 |
T |
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| Q |
319 |
cacttatctgttttctctaaggttgtaatgtgaccaatgttgcttttgttactattatcactgtgtgtcactacagattgaagatgctttattttcttcc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
19568009 |
cacttatctgttttctctaaggttgtaatgtgaccaatgttgcttttgttactattatcactgtgtgtcactacagattgaagatgctttcttttcttcc |
19568108 |
T |
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| Q |
419 |
atttaaaataatgcctagagaatcatgagaataat |
453 |
Q |
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| T |
19568109 |
aatttaaataatggctagagaatcatgagaataat |
19568143 |
T |
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