View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18661_low_10 (Length: 348)
Name: NF18661_low_10
Description: NF18661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18661_low_10 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 14 - 348
Target Start/End: Complemental strand, 45693252 - 45692897
Alignment:
| Q |
14 |
cacatacatctggacttgctgctttacatgggatggcaagaccaaatcctcaaatgtttgggcttcaagctggtcagggactgcacatgccaatgccaag |
113 |
Q |
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| T |
45693252 |
cacatacatctggacttgctgctttacatgggatggtaagaccaaatcctcaaatgtttgggcttcaagctggtcagggactgcacatgccaatgccaag |
45693153 |
T |
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| Q |
114 |
tgcttcaatgttttcttatcccggagagcctgttatgaactcatcagctgtagaattaaatgctagtggaacagcaggactaatggaaaccgtggaatcg |
213 |
Q |
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| T |
45693152 |
tgcttcaatgttttcttatcccggagagcctgttatgaactcatcagctgtagaattaaatgctagtggaacagcaggactaatggaaaccgtggaatcg |
45693053 |
T |
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| Q |
214 |
gcttcagcctctaagttaaag---------------------gatccaatgccaaatgtgaactcgcaagttatgctaaacaacaagggatgtagctcaa |
292 |
Q |
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| T |
45693052 |
gcttcagcctctaagttaaaggatcaaatgcctaagttaaaggatccaatgccaaatgtgaactcacaagttatgctaaacaacaagggatgtagctcaa |
45692953 |
T |
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| Q |
293 |
caaatcaaatgtcgatccaggtcagtttgtacgaagatatctccttttctgttttt |
348 |
Q |
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| T |
45692952 |
caaatcaaatgtcgatccaggtcagtttgtacgaagatatctccttttctgttttt |
45692897 |
T |
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