View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18661_low_12 (Length: 334)
Name: NF18661_low_12
Description: NF18661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18661_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 6e-96; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 11688352 - 11688529
Alignment:
| Q |
1 |
acaaactaatcaatgttttcaaccttttgaattatagtattaacaaaacaagaatagtcattgcaagtaatagttcttttaattgttgaaaaactcaaga |
100 |
Q |
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| T |
11688352 |
acaaactaatcaatgttttcaaccttttgaattatagtattaacaaaacaagaatagtcattgcaagtaatagttcttttaattgttgaaaaactcaaga |
11688451 |
T |
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| Q |
101 |
gtccaactactttgtttaattaataccatcctaagaaaattaatttagaaacataccaaaatgttggaattttcagct |
178 |
Q |
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| T |
11688452 |
gtccaactactttgtttaattaataccatcctaagaaaattaatttagaaacataccaaaatgttggaattttcagct |
11688529 |
T |
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Target: chr5; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 238 - 316
Target Start/End: Original strand, 11688593 - 11688671
Alignment:
| Q |
238 |
gactttcaactttgtagtgagagaaagtgtttgagagtgtaccttatagaatgaaagtgaatctgatctttaaatctaa |
316 |
Q |
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| T |
11688593 |
gactttcaactttgtagtgagagaaagtgtttgagagtgtaccttatagaatgaaagtgaatctgatctttaaatctaa |
11688671 |
T |
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