View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18661_low_17 (Length: 284)
Name: NF18661_low_17
Description: NF18661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18661_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 4 - 202
Target Start/End: Complemental strand, 29642148 - 29641955
Alignment:
| Q |
4 |
ataggagcatcaaatcaaatatattccctttaaacatttgattatattgaatacgaaattgaagaatttgttacataagttttctaaaaaccataagata |
103 |
Q |
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| T |
29642148 |
ataggagcatcaaatcaaatatataccctttaaacatttgattatattgaatacgaaattgaagaatttgttacataagttttctaaaaactataagata |
29642049 |
T |
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| Q |
104 |
aagtgtggagttatattatatgagagtaaaagaagtgcttcttgaggtgtcacctaagaaaaaatttagtattagaatgactcaaattcagtttacaaa |
202 |
Q |
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| T |
29642048 |
aagtgtggagtt-----atatgagagtaaaagaagtgcttcttgaggtgtcacctaagaaaaaatttagaattagaatgactcaaattcagtttacaaa |
29641955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 126 - 202
Target Start/End: Complemental strand, 29639901 - 29639825
Alignment:
| Q |
126 |
agagtaaaagaagtgcttcttgaggtgtcacctaagaaaaaatttagtattagaatgactcaaattcagtttacaaa |
202 |
Q |
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|||||| ||||||||||||| ||||||||||| || |||| ||||||||||||| | |||||||| |||||||||| |
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| T |
29639901 |
agagtataagaagtgcttctagaggtgtcacccaaacaaaattttagtattagaaagtctcaaatttagtttacaaa |
29639825 |
T |
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