View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18661_low_18 (Length: 275)
Name: NF18661_low_18
Description: NF18661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18661_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 165 - 212
Target Start/End: Complemental strand, 2364676 - 2364629
Alignment:
| Q |
165 |
agacatcacagcaaacagccgtttaacaattcttgagctccaagcttt |
212 |
Q |
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| T |
2364676 |
agacatcacagcaaacagccgtttaacaattcttgagctccaagcttt |
2364629 |
T |
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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 2365003 - 2364954
Alignment:
| Q |
1 |
tagttttttatgaaactcatggataaaaggagagccggataacgtgaagc |
50 |
Q |
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| T |
2365003 |
tagttttttatgaaactcatggataaaaggagagccatataacatgaagc |
2364954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 258
Target Start/End: Complemental strand, 2364611 - 2364569
Alignment:
| Q |
215 |
tcatttcatttgtcaattttcagtaagatgaattgagccatagt |
258 |
Q |
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| T |
2364611 |
tcatttcatttgtcaattttcagtaagatg-attaagccatagt |
2364569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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