View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18661_low_2 (Length: 701)

Name: NF18661_low_2
Description: NF18661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18661_low_2
NF18661_low_2
[»] chr8 (15 HSPs)
chr8 (9-107)||(30203262-30203360)
chr8 (9-107)||(26724708-26724806)
chr8 (9-107)||(39566059-39566157)
chr8 (9-107)||(16220766-16220864)
chr8 (9-107)||(3460730-3460828)
chr8 (10-107)||(36265874-36265970)
chr8 (9-80)||(8747805-8747876)
chr8 (9-107)||(41313052-41313150)
chr8 (438-483)||(33157237-33157282)
chr8 (10-80)||(4679964-4680034)
chr8 (9-80)||(13903823-13903894)
chr8 (21-107)||(40463894-40463979)
chr8 (459-512)||(27302596-27302649)
chr8 (9-46)||(42639687-42639724)
chr8 (9-53)||(30202742-30202786)
[»] chr4 (15 HSPs)
chr4 (9-107)||(5385733-5385830)
chr4 (9-107)||(53849400-53849498)
chr4 (9-92)||(54801665-54801748)
chr4 (9-106)||(48706879-48706976)
chr4 (20-107)||(4729351-4729438)
chr4 (9-107)||(36119549-36119647)
chr4 (9-102)||(7138745-7138838)
chr4 (37-107)||(10310409-10310479)
chr4 (9-107)||(48035404-48035502)
chr4 (9-107)||(31518360-31518458)
chr4 (61-107)||(46307363-46307409)
chr4 (50-107)||(23544135-23544192)
chr4 (21-81)||(24064039-24064099)
chr4 (28-92)||(50302251-50302315)
chr4 (28-92)||(50303525-50303589)
[»] chr1 (10 HSPs)
chr1 (9-104)||(1049004-1049099)
chr1 (28-105)||(46599064-46599141)
chr1 (9-107)||(14592084-14592182)
chr1 (9-80)||(39202117-39202188)
chr1 (9-107)||(1047841-1047939)
chr1 (14-107)||(35949996-35950088)
chr1 (9-84)||(46101919-46101994)
chr1 (9-46)||(38459128-38459165)
chr1 (9-81)||(29675365-29675437)
chr1 (37-105)||(48651690-48651757)
[»] chr3 (12 HSPs)
chr3 (9-107)||(34721014-34721112)
chr3 (9-107)||(30675633-30675731)
chr3 (9-93)||(7330923-7331007)
chr3 (7-107)||(10723701-10723801)
chr3 (9-105)||(28850054-28850150)
chr3 (9-107)||(31543491-31543589)
chr3 (21-81)||(12406068-12406128)
chr3 (9-80)||(8706367-8706438)
chr3 (9-80)||(9058254-9058325)
chr3 (35-105)||(29077366-29077435)
chr3 (9-46)||(41055760-41055797)
chr3 (9-106)||(45774551-45774648)
[»] chr6 (7 HSPs)
chr6 (9-107)||(24167255-24167353)
chr6 (9-107)||(34516339-34516437)
chr6 (35-107)||(28482702-28482774)
chr6 (35-107)||(29795117-29795189)
chr6 (9-79)||(7465737-7465807)
chr6 (9-82)||(33858916-33858989)
chr6 (447-479)||(17947433-17947465)
[»] chr2 (9 HSPs)
chr2 (9-107)||(13481425-13481523)
chr2 (9-106)||(3601775-3601872)
chr2 (7-106)||(13039512-13039611)
chr2 (9-80)||(21195945-21196016)
chr2 (37-107)||(29078401-29078471)
chr2 (29-107)||(31642512-31642590)
chr2 (9-106)||(925728-925825)
chr2 (355-481)||(10638090-10638217)
chr2 (9-46)||(35048252-35048289)
[»] scaffold0294 (1 HSPs)
scaffold0294 (10-107)||(2106-2203)
[»] chr5 (9 HSPs)
chr5 (2-107)||(19555228-19555333)
chr5 (444-507)||(26691199-26691262)
chr5 (444-507)||(26960931-26960994)
chr5 (441-504)||(1821534-1821597)
chr5 (33-107)||(43229198-43229272)
chr5 (9-105)||(20654667-20654763)
chr5 (21-107)||(23153612-23153697)
chr5 (24-53)||(35206599-35206628)
chr5 (24-53)||(35210526-35210555)
[»] chr7 (10 HSPs)
chr7 (9-107)||(41084981-41085079)
chr7 (9-93)||(29272742-29272826)
chr7 (9-107)||(22491731-22491829)
chr7 (9-81)||(33055531-33055603)
chr7 (9-107)||(39878605-39878703)
chr7 (9-84)||(25750221-25750296)
chr7 (444-499)||(28172990-28173045)
chr7 (9-80)||(38477688-38477759)
chr7 (9-107)||(3765713-3765811)
chr7 (33-81)||(45223641-45223689)


Alignment Details
Target: chr8 (Bit Score: 91; Significance: 1e-43; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 30203360 - 30203262
Alignment:
Q  9 gaaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagtagaatagaaagtaggaggaaagaaag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  30203360 gaaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatggttgtttggtaaaagagaaagtagaatagaaagtaagaggaaagaaag 30203262  T

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Target: chr8; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 26724806 - 26724708
Alignment:
Q  9 gaaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagtagaatagaaagtaggaggaaagaaag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||    
T  26724806 gaaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatggttgtttggtaaaagagaaagtagaatagaaagtaaaaggaaagaaag 26724708  T

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Target: chr8; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 39566157 - 39566059
Alignment:
Q  9 gaaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagtagaatagaaagtaggaggaaagaaag 107  Q
    |||| ||||| ||||||| |||| |||||||||||||||| ||||||| || |||||||||| | |||||||| ||||||||||| |||||||||||||    
T  39566157 gaaatattgtctaaggaaagaaaaagagtagaaagtgagaggattgttttggttgtttggtacacgagaaagtggaatagaaagttggaggaaagaaag 39566059  T

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Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 16220864 - 16220766
Alignment:
Q  9 gaaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagtagaatagaaagtaggaggaaagaaag 107  Q
    |||||||||| ||||||| |||| |||||||||||||| | ||||||| ||  ||||||||| |||||||||| |||||||||||   |||||||||||    
T  16220864 gaaagattgtataaggaaagaaaaagagtagaaagtgaaaggattgttttggatgtttggtataagagaaagtggaatagaaagttaaaggaaagaaag 16220766  T

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Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 3460730 - 3460828
Alignment:
Q  9 gaaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagtagaatagaaagtaggaggaaagaaag 107  Q
    |||||||||||||||||| |||||  |||||||| |||    ||||||||| |||||||||| |||||||||| || ||||||||  ||||||||||||    
T  3460730 gaaagattgtgtaaggaaagaaagtaagtagaaaatgaaggaattgttatggttgtttggtataagagaaagtggattagaaagtgagaggaaagaaag 3460828  T

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Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 107
Target Start/End: Complemental strand, 36265970 - 36265874
Alignment:
Q  10 aaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagtagaatagaaagtaggaggaaagaaag 107  Q
    ||||||||| ||||||| |||| |||||||||||||||| |||| ||  | ||||||| || |||||||||| | ||||||||| |||||||||||||    
T  36265970 aaagattgtctaaggaaagaaa-agagtagaaagtgagaggattatttgggttgtttgatacaagagaaagtgggatagaaagttggaggaaagaaag 36265874  T

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Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 8747876 - 8747805
Alignment:
Q  9 gaaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaag 80  Q
    |||||||||||||||||| ||| |||||||||||||| ||||||| |  |  |||||||||| |||||||||    
T  8747876 gaaagattgtgtaaggaaggaatgagagtagaaagtgggatgattttacttgttgtttggtataagagaaag 8747805  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 41313150 - 41313052
Alignment:
Q  9 gaaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagtagaatagaaagtaggaggaaagaaag 107  Q
    |||||||| ||||||||| |||||  |||||||| |||   |||||||||| |||||||||| ||||||||||  | ||||||||   |||||||||||    
T  41313150 gaaagattctgtaaggaaagaaagtaagtagaaaatgaagggattgttatggttgtttggtataagagaaagtgaattagaaagtgaaaggaaagaaag 41313052  T

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Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 438 - 483
Target Start/End: Original strand, 33157237 - 33157282
Alignment:
Q  438 acattaaccccaaccaatatacttttatgaaaatttacttttaatc 483  Q
    ||||||||||||| ||| ||||||||||||||||| ||||||||||    
T  33157237 acattaaccccaaacaacatacttttatgaaaattaacttttaatc 33157282  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 4680034 - 4679964
Alignment:
Q  10 aaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatga-ttgtttggtaaaagagaaag 80  Q
    |||||||||| | |||| ||| |||||||||||||||||||||| |||| | |||||||||| |||||||||    
T  4680034 aaagattgtgaacggaaggaatgagagtagaaagtgagatgatt-ttattagttgtttggtataagagaaag 4679964  T

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Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 13903823 - 13903894
Alignment:
Q  9 gaaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaag 80  Q
    |||||||||||  |||||  || ||||||||||||||||||||||||  |  |||||||||| |||||||||    
T  13903823 gaaagattgtgataggaagaaatgagagtagaaagtgagatgattgtattagttgtttggtataagagaaag 13903894  T

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Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 107
Target Start/End: Original strand, 40463894 - 40463979
Alignment:
Q  21 aaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagtagaatagaaagtaggaggaaagaaag 107  Q
    |||||| |||||  || ||||||||||||||||||| || |||||||||| || ||||||| |||||||  ||  ||||||||||||    
T  40463894 aaggaaagaaaggtagaagaaagtgagatgattgttttggttgtttggtataaaagaaagt-gaatagattgttagaggaaagaaag 40463979  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 459 - 512
Target Start/End: Complemental strand, 27302649 - 27302596
Alignment:
Q  459 cttttatgaaaatttacttttaatcaagacatcacctcaaatagaataaaattg 512  Q
    ||||| |||||||||||||| || |||||||||| |||||| ||||| ||||||    
T  27302649 cttttgtgaaaatttactttaaaacaagacatcaactcaaaaagaattaaattg 27302596  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 42639687 - 42639724
Alignment:
Q  9 gaaagattgtgtaaggaatgaaagagagtagaaagtga 46  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  42639687 gaaagattgttgaaggaatgaaagagagtagaaagtga 42639724  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 30202786 - 30202742
Alignment:
Q  9 gaaagattgtgtaaggaatgaaagagagtagaaagtgagatgatt 53  Q
    ||||||||||| |||||| ||| |||||||||||| |||||||||    
T  30202786 gaaagattgtgaaaggaaggaatgagagtagaaagagagatgatt 30202742  T

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Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 5385733 - 5385830
Alignment:
Q  9 gaaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagtagaatagaaagtaggaggaaagaaag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||| ||||||||||||    
T  5385733 gaaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatggttgtttggtagaagagaaagtagaa-agaaagtaagaggaaagaaag 5385830  T

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Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 53849498 - 53849400
Alignment:
Q  9 gaaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagtagaatagaaagtaggaggaaagaaag 107  Q
    |||||||| ||||||||||||||||||||||||||| | || ||||||||| ||||||||||||||||||||||||||| |||||| ||| ||||||||    
T  53849498 gaaagattatgtaaggaatgaaagagagtagaaagttaaataattgttatggttgtttggtaaaagagaaagtagaataaaaagtaagagaaaagaaag 53849400  T

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Target: chr4; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 9 - 92
Target Start/End: Original strand, 54801665 - 54801748
Alignment:
Q  9 gaaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagtagaatagaaag 92  Q
    ||||||||||| |||||| ||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||    
T  54801665 gaaagattgtgcaaggaaagaaagagagtagaaagtaagaggattgttatgattgtttggtacaagagaaagtagaatagaaag 54801748  T

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Target: chr4; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 9 - 106
Target Start/End: Original strand, 48706879 - 48706976
Alignment:
Q  9 gaaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagtagaatagaaagtaggaggaaagaaa 106  Q
    |||||||||| ||||||| || | |||||||||||||||| ||||||| || |||||||||| |||||||||| ||||||||||| ||||||||||||    
T  48706879 gaaagattgtctaaggaaagagaaagagtagaaagtgagaggattgttttggttgtttggtacaagagaaagtggaatagaaagttggaggaaagaaa 48706976  T

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Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 4729438 - 4729351
Alignment:
Q  20 taaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagtagaatagaaagtaggaggaaagaaag 107  Q
    ||||||| |||| | |||||||||||||||||||||| || |||||||||| |||||||| |  |||||||||| |||| ||||||||    
T  4729438 taaggaaagaaaaatagtagaaagtgagatgattgttttggttgtttggtacaagagaaattgaaatagaaagttggagaaaagaaag 4729351  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 36119647 - 36119549
Alignment:
Q  9 gaaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagtagaatagaaagtaggaggaaagaaag 107  Q
    |||||||| | | ||||| |||| ||| |||||| ||||| ||||||| || |||||||||| || ||||||| ||||||||||| | |||||||||||    
T  36119647 gaaagattatatgaggaaagaaaaagaatagaaaatgagaggattgttttggttgtttggtataaaagaaagtggaatagaaagttgaaggaaagaaag 36119549  T

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Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 9 - 102
Target Start/End: Original strand, 7138745 - 7138838
Alignment:
Q  9 gaaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagtagaatagaaagtaggaggaaa 102  Q
    |||||||||| | ||||| ||| |||||| |||||||||| ||||||| ||||||||||||  |||||||||| || |||| |||  |||||||    
T  7138745 gaaagattgtatgaggaaagaatgagagtggaaagtgagaggattgttttgattgtttggtttaagagaaagtggattagacagtttgaggaaa 7138838  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 10310479 - 10310409
Alignment:
Q  37 tagaaagtgagatgattgttatgattgtttggtaaaagagaaagtagaatagaaagtaggaggaaagaaag 107  Q
    |||||||||||  ||||||| || |||||||||| || ||||||| ||||||||||| | |||||||||||    
T  10310479 tagaaagtgaggggattgttttggttgtttggtataaaagaaagtggaatagaaagttgaaggaaagaaag 10310409  T

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Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 48035404 - 48035502
Alignment:
Q  9 gaaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagtagaatagaaagtaggaggaaagaaag 107  Q
    |||||||||| | ||||| ||||  ||||||||||||||  |||| || || |||||| ||| |||||||||| || | |||||| |||||||||||||    
T  48035404 gaaagattgtatgaggaaagaaaaggagtagaaagtgaggggattattttggttgtttcgtataagagaaagtggattggaaagttggaggaaagaaag 48035502  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 31518360 - 31518458
Alignment:
Q  9 gaaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagtagaatagaaagtaggaggaaagaaag 107  Q
    |||||||||||||||||| |||||  |||||||| | |   |||||| ||| |||||||||| |||| ||||| || ||||||||   |||||||||||    
T  31518360 gaaagattgtgtaaggaaagaaagtaagtagaaaataaagggattgtcatggttgtttggtataagataaagtggattagaaagtgaaaggaaagaaag 31518458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 61 - 107
Target Start/End: Original strand, 46307363 - 46307409
Alignment:
Q  61 ttgtttggtaaaagagaaagtagaatagaaagtaggaggaaagaaag 107  Q
    |||||||||| |||||||||| ||||||||||| | |||||||||||    
T  46307363 ttgtttggtataagagaaagttgaatagaaagttgaaggaaagaaag 46307409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 23544135 - 23544192
Alignment:
Q  50 gattgttatgattgtttggtaaaagagaaagtagaatagaaagtaggaggaaagaaag 107  Q
    ||||||| || |||||||||| || ||||||| ||||||||||| | |||||||||||    
T  23544135 gattgttttggttgtttggtataaaagaaagtggaatagaaagttgaaggaaagaaag 23544192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 24064099 - 24064039
Alignment:
Q  21 aaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagt 81  Q
    |||||| |||||  || ||||||||||||||||||| |||| |||||||| || |||||||    
T  24064099 aaggaaagaaaggtagaagaaagtgagatgattgttttgatggtttggtataaaagaaagt 24064039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 50302315 - 50302251
Alignment:
Q  28 gaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagtagaatagaaag 92  Q
    |||| |||||||||||||||  ||||||| || |||||||||| ||  ||||||| |||||||||    
T  50302315 gaaaaagagtagaaagtgaggggattgttttggttgtttggtataaaggaaagtaaaatagaaag 50302251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 50303589 - 50303525
Alignment:
Q  28 gaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagtagaatagaaag 92  Q
    |||| |||||||||||||||  ||||||| || |||||||||| ||  ||||||| |||||||||    
T  50303589 gaaaaagagtagaaagtgaggggattgttttggttgtttggtataaaggaaagtaaaatagaaag 50303525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 9e-35; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 9 - 104
Target Start/End: Complemental strand, 1049099 - 1049004
Alignment:
Q  9 gaaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagtagaatagaaagtaggaggaaaga 104  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||    
T  1049099 gaaagattgtgtaagaaatgaaagagagtagaaagtgaaatgattgttatggttgtttggtagaagagaaagtagaatagaaagtaagaggaaaga 1049004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 28 - 105
Target Start/End: Original strand, 46599064 - 46599141
Alignment:
Q  28 gaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagtagaatagaaagtaggaggaaagaa 105  Q
    ||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  46599064 gaaagagagtagaaagtaagaggattgttatgattgtttggtacaagagaaagtagaatagaaagtaagaggaaagaa 46599141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 14592182 - 14592084
Alignment:
Q  9 gaaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagtagaatagaaagtaggaggaaagaaag 107  Q
    |||||||||| ||||||| ||||||||||||||||| ||  ||||||| || |||||||||| |||||||||| ||||||||||| |||||||||||||    
T  14592182 gaaagattgtctaaggaaagaaagagagtagaaagtaagcggattgttttggttgtttggtacaagagaaagtggaatagaaagttggaggaaagaaag 14592084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 39202188 - 39202117
Alignment:
Q  9 gaaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatga-ttgtttggtaaaagagaaag 80  Q
    |||||||||||||||||| ||| ||||||||||||| |||||||| |||| | |||||||||| |||||||||    
T  39202188 gaaagattgtgtaaggaaagaatgagagtagaaagtaagatgatt-ttattagttgtttggtacaagagaaag 39202117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 1047841 - 1047939
Alignment:
Q  9 gaaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagtagaatagaaagtaggaggaaagaaag 107  Q
    |||||||||| || |||| |||| | |||||| ||  ||| ||||||| |  |||||||||| |||||||||| ||||||||||| ||| |||||||||    
T  1047841 gaaagattgtatagggaaagaaaaatagtagataggaagaggattgttttagttgtttggtacaagagaaagtggaatagaaagttggaagaaagaaag 1047939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 35949996 - 35950088
Alignment:
Q  14 attgtgtaaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagtagaatagaaagtaggaggaaagaaag 107  Q
    ||||| ||||||| ||||||  ||||||||| ||  ||||||| || |||||||||| ||||||| || ||||||||||| |||| ||||||||    
T  35949996 attgtctaaggaaagaaagatcgtagaaagtaagg-gattgttttggttgtttggtacaagagaatgtggaatagaaagttggagaaaagaaag 35950088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 46101994 - 46101919
Alignment:
Q  9 gaaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagtaga 84  Q
    ||||||| ||| |||||| ||||  |||| |||||| ||||||||| | || |||||||||| |||||||||||||    
T  46101994 gaaagatagtgaaaggaaagaaaatgagtggaaagtaagatgattgatttggttgtttggtataagagaaagtaga 46101919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 38459165 - 38459128
Alignment:
Q  9 gaaagattgtgtaaggaatgaaagagagtagaaagtga 46  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  38459165 gaaagattgttgaaggaatgaaagagagtagaaagtga 38459128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 9 - 81
Target Start/End: Original strand, 29675365 - 29675437
Alignment:
Q  9 gaaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagt 81  Q
    |||||||||| | ||||| |||| ||||||||||||||   ||||||| |  |||||||||| ||||||||||    
T  29675365 gaaagattgtatgaggaaagaaaaagagtagaaagtgatgggattgttttagttgtttggtataagagaaagt 29675437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 37 - 105
Target Start/End: Original strand, 48651690 - 48651757
Alignment:
Q  37 tagaaagtgagatgattgttatgattgtttggtaaaagagaaagtagaatagaaagtaggaggaaagaa 105  Q
    |||||||||||| |||  || ||||||||||||| |||||||||| ||||| ||||| | |||||||||    
T  48651690 tagaaagtgagaagatatttttgattgtttggtataagagaaagt-gaataaaaagtggaaggaaagaa 48651757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 5e-27; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 34721112 - 34721014
Alignment:
Q  9 gaaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagtagaatagaaagtaggaggaaagaaag 107  Q
    |||||||| || |||||| |||||| |||||||||| |||||||||||||||||||||| || ||||||||||| ||||||||||| ||||||||||||    
T  34721112 gaaagattatgcaaggaaagaaagaaagtagaaagtaagatgattgttatgattgtttgatacaagagaaagtataatagaaagtaagaggaaagaaag 34721014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 30675633 - 30675731
Alignment:
Q  9 gaaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagtagaatagaaagtaggaggaaagaaag 107  Q
    |||||||||  ||||||| |||| |||||||||||||||| ||||||| || |||||||||| ||| |||||| |||| |||||| |||||||||||||    
T  30675633 gaaagattgcctaaggaaagaaaaagagtagaaagtgagaggattgttttggttgtttggtacaagggaaagtggaatggaaagttggaggaaagaaag 30675731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 9 - 93
Target Start/End: Complemental strand, 7331007 - 7330923
Alignment:
Q  9 gaaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagtagaatagaaagt 93  Q
    |||||||||| | ||||| ||| |||||| |||||||||| ||||||| ||||||||||||  |||||||||| || ||||||||    
T  7331007 gaaagattgtatgaggaaagaaggagagtggaaagtgagaggattgttttgattgtttggtttaagagaaagtggattagaaagt 7330923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 7 - 107
Target Start/End: Complemental strand, 10723801 - 10723701
Alignment:
Q  7 atgaaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagtagaatagaaagtaggaggaaagaaa 106  Q
    |||||||||||| | ||||| ||||||||| ||||||||||  |||| || |  |||||||||| || ||||||| ||||||||||| | ||||||||||    
T  10723801 atgaaagattgtatgaggaaagaaagagaggagaaagtgaggggattattttagttgtttggtataatagaaagtggaatagaaagttgaaggaaagaaa 10723702  T
Q  107 g 107  Q
    |    
T  10723701 g 10723701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 28850150 - 28850054
Alignment:
Q  9 gaaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagtagaatagaaagtaggaggaaagaa 105  Q
    |||||||||| | |||||  || |||||| |||||||||||||||||| || |||||||||  |||||||||| || | ||||||  ||||||||||    
T  28850150 gaaagattgtatgaggaaaaaatgagagtggaaagtgagatgattgttttggttgtttggtttaagagaaagtggattcgaaagtttgaggaaagaa 28850054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 31543589 - 31543491
Alignment:
Q  9 gaaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagtagaatagaaagtaggaggaaagaaag 107  Q
    |||||||||||||||||| |||||  |||||||| | |   |||||||||| |||||||||| |||||||||| |  ||||||||   |||||||||||    
T  31543589 gaaagattgtgtaaggaaagaaagtaagtagaaaataaagggattgttatggttgtttggtataagagaaagtgggttagaaagtgaaaggaaagaaag 31543491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 12406068 - 12406128
Alignment:
Q  21 aaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagt 81  Q
    |||||||||||| |||||||||||||||||||| || |  |||||||||| ||| ||||||    
T  12406068 aaggaatgaaagtgagtagaaagtgagatgattattttagttgtttggtataagtgaaagt 12406128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 8706367 - 8706438
Alignment:
Q  9 gaaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaag 80  Q
    ||||||||||| ||||||  || |||||||||||||||||||||| |  | ||||||||||| | |||||||    
T  8706367 gaaagattgtgaaaggaagaaatgagagtagaaagtgagatgattttattaattgtttggtataggagaaag 8706438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 9058254 - 9058325
Alignment:
Q  9 gaaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaag 80  Q
    ||||||||||| ||||||  || |||||||||||||||||||||| |  | ||||||||||| | |||||||    
T  9058254 gaaagattgtgaaaggaagaaatgagagtagaaagtgagatgattttattaattgtttggtataggagaaag 9058325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 29077366 - 29077435
Alignment:
Q  35 agtagaaagtgagatgattgttatgattgtttggtaaaagagaaagtagaatagaaagtaggaggaaagaa 105  Q
    |||||||||||||| |||  || || |||||||||| |||||||||| ||||||||||| | |||||||||    
T  29077366 agtagaaagtgagaagatccttttggttgtttggtataagagaaagt-gaatagaaagtggaaggaaagaa 29077435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 41055797 - 41055760
Alignment:
Q  9 gaaagattgtgtaaggaatgaaagagagtagaaagtga 46  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  41055797 gaaagattgttgaaggaatgaaagagagtagaaagtga 41055760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 106
Target Start/End: Original strand, 45774551 - 45774648
Alignment:
Q  9 gaaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagtagaatagaaagtaggaggaaagaaa 106  Q
    |||||||||| || |||| ||||  |||| |||||| ||| ||||| | || |||||||||| |||||||||||||  |||||||   ||||||||||    
T  45774551 gaaagattgtatacggaaagaaaatgagtggaaagtaagaggattgatttggttgtttggtataagagaaagtagagaagaaagtgaaaggaaagaaa 45774648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 1e-24; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 24167353 - 24167255
Alignment:
Q  9 gaaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagtagaatagaaagtaggaggaaagaaag 107  Q
    |||||||||| ||||||| ||||||||||||||||| |||||||| || || |||||||||| |||||||| | ||||||||||| |||||||||||||    
T  24167353 gaaagattgtctaaggaaagaaagagagtagaaagtaagatgattattttggttgtttggtacaagagaaactggaatagaaagttggaggaaagaaag 24167255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 34516437 - 34516339
Alignment:
Q  9 gaaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagtagaatagaaagtaggaggaaagaaag 107  Q
    |||||||| | | ||||| |||| ||| |||||||||||| ||||||| || |||||||||| || ||||||| |||| ||||||   |||||||||||    
T  34516437 gaaagattatatgaggaaagaaaaagaatagaaagtgagaggattgttttggttgtttggtataaaagaaagtggaatggaaagttaaaggaaagaaag 34516339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 28482774 - 28482702
Alignment:
Q  35 agtagaaagtgagatgattgttatgattgtttggtaaaagagaaagtagaatagaaagtaggaggaaagaaag 107  Q
    |||||||||| ||| ||||||| || || ||||||| ||||||||||  |||||||||  |||||||||||||    
T  28482774 agtagaaagtaagaagattgttttggttatttggtacaagagaaagtgaaatagaaagatggaggaaagaaag 28482702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 29795189 - 29795117
Alignment:
Q  35 agtagaaagtgagatgattgttatgattgtttggtaaaagagaaagtagaatagaaagtaggaggaaagaaag 107  Q
    |||||||||| ||| ||||||| || || ||||||| ||||||||||  |||||||||  |||||||||||||    
T  29795189 agtagaaagtaagaagattgttttggttatttggtacaagagaaagtgaaatagaaagatggaggaaagaaag 29795117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 7465807 - 7465737
Alignment:
Q  9 gaaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatga-ttgtttggtaaaagagaaa 79  Q
    ||||||||||| |||||| ||| ||||||||||||||| |||||| |||| | |||||||||| ||||||||    
T  7465807 gaaagattgtgaaaggaaggaatgagagtagaaagtgaaatgatt-ttattagttgtttggtataagagaaa 7465737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 33858989 - 33858916
Alignment:
Q  9 gaaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagta 82  Q
    |||||||||| ||||||| ||||  |||| |||||| ||| ||||| | || |||||||||| |||||||||||    
T  33858989 gaaagattgtataaggaaagaaaatgagtggaaagtaagaggattgatttggttgtttggtataagagaaagta 33858916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 447 - 479
Target Start/End: Original strand, 17947433 - 17947465
Alignment:
Q  447 ccaaccaatatacttttatgaaaatttactttt 479  Q
    |||| ||||||||||||||||||||||||||||    
T  17947433 ccaaacaatatacttttatgaaaatttactttt 17947465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 13481425 - 13481523
Alignment:
Q  9 gaaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagtagaatagaaagtaggaggaaagaaag 107  Q
    |||||||||| ||||||| |||| |||||||||||||||| ||||||| || |||||||||| ||| |||||| ||||||||||| |||||||||||||    
T  13481425 gaaagattgtctaaggaaagaaaaagagtagaaagtgagaggattgttttggttgtttggtacaagggaaagtggaatagaaagttggaggaaagaaag 13481523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 106
Target Start/End: Original strand, 3601775 - 3601872
Alignment:
Q  9 gaaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagtagaatagaaagtaggaggaaagaaa 106  Q
    |||||||||| ||||||| |||| |||||||||||||||| ||||||| || ||||||| || || ||||||| || |||||| | | ||||||||||    
T  3601775 gaaagattgtttaaggaaagaaaaagagtagaaagtgagaggattgttttggttgtttgatacaaaagaaagtggagtagaaaattgaaggaaagaaa 3601872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 13039512 - 13039611
Alignment:
Q  7 atgaaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagtagaatagaaagtaggaggaaagaaa 106  Q
    |||||||||||| ||||||| |||| |||||||||| ||||  ||||||| || |||||||||| |||| ||| | ||||| ||||| ||| ||||||||    
T  13039512 atgaaagattgtctaaggaaagaaaaagagtagaaaatgagtagattgttttgtttgtttggtacaagaaaaaatggaataaaaagttggaagaaagaaa 13039611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 21196016 - 21195945
Alignment:
Q  9 gaaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatga-ttgtttggtaaaagagaaag 80  Q
    ||||||||||| |||||| ||| |||||||||||||||||||||| |||| | |||||||||| |||||||||    
T  21196016 gaaagattgtgaaaggaaggaatgagagtagaaagtgagatgatt-ttattagttgtttggtataagagaaag 21195945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 29078401 - 29078471
Alignment:
Q  37 tagaaagtgagatgattgttatgattgtttggtaaaagagaaagtagaatagaaagtaggaggaaagaaag 107  Q
    |||||||||||  ||||||| || |||||||||| || ||||||| ||||||||||| | |||||||||||    
T  29078401 tagaaagtgaggggattgttttggttgtttggtataaaagaaagtggaatagaaagttgaaggaaagaaag 29078471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 107
Target Start/End: Complemental strand, 31642590 - 31642512
Alignment:
Q  29 aaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagtagaatagaaagtaggaggaaagaaag 107  Q
    ||||||||| |||||||| | ||||||| || |||||||||| || |||||||| | |||||||| | |||||||||||    
T  31642590 aaagagagtggaaagtgaaaggattgttttggttgtttggtataaaagaaagtaaagtagaaagttgaaggaaagaaag 31642512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 106
Target Start/End: Complemental strand, 925825 - 925728
Alignment:
Q  9 gaaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagtagaatagaaagtaggaggaaagaaa 106  Q
    |||||||||| |||||||  ||| ||||| |||||| ||| ||||| | || |||||||||| |||||||||||||  |||||||   ||||||||||    
T  925825 gaaagattgtataaggaaaaaaaaagagtggaaagtaagaggattgatttggttgtttggtataagagaaagtagagaagaaagtgaaaggaaagaaa 925728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 355 - 481
Target Start/End: Original strand, 10638090 - 10638217
Alignment:
Q  355 ataggcagccccaaatataaaaaagggaagacaaccattt--acaattcattaccaatgacgcctaatgtagccaagattgtgcgacattaaccccaacc 452  Q
    ||||| ||||||||||||| ||| |||||||||| |||||  ||||||||| |||||||| | || ||| |||||| | |   | |||||||||||||||    
T  10638090 ataggtagccccaaatatagaaa-gggaagacaaacatttttacaattcataaccaatgatgtctcatgcagccaatagtcgaccacattaaccccaacc 10638188  T
Q  453 aatatacttttatgaaaatttacttttaa 481  Q
    || | ||| ||||||||||| || |||||    
T  10638189 aacaaactcttatgaaaattaacctttaa 10638217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 35048289 - 35048252
Alignment:
Q  9 gaaagattgtgtaaggaatgaaagagagtagaaagtga 46  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  35048289 gaaagattgttgaaggaatgaaagagagtagaaagtga 35048252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 2106 - 2203
Alignment:
Q  10 aaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagtagaatagaaagtaggaggaaagaaag 107  Q
    ||||||||| ||||||| |||| |||||||||||||||| ||||||| || |||||||||| ||| |||||| ||||||||||| |||||||||||||    
T  2106 aaagattgtctaaggaaagaaaaagagtagaaagtgagaggattgttttggttgtttggtacaagggaaagtggaatagaaagttggaggaaagaaag 2203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 2 - 107
Target Start/End: Complemental strand, 19555333 - 19555228
Alignment:
Q  2 gagagatgaaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagtagaatagaaagtaggaggaa 101  Q
    |||| |||||||||||| ||||||| |||| |||||||||||| ||| ||||||| || |||||||||| || ||||||| ||||||||||| | |||||    
T  19555333 gagatatgaaagattgtctaaggaaagaaaaagagtagaaagtaagaagattgttttggttgtttggtataaaagaaagtggaatagaaagttgaaggaa 19555234  T
Q  102 agaaag 107  Q
    ||||||    
T  19555233 agaaag 19555228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 444 - 507
Target Start/End: Original strand, 26691199 - 26691262
Alignment:
Q  444 accccaaccaatatacttttatgaaaatttacttttaatcaagacatcacctcaaatagaataa 507  Q
    ||||||||||||||||||||||||||||||||||||||   | | ||||||||||| |||||||    
T  26691199 accccaaccaatatacttttatgaaaatttacttttaaatcatatatcacctcaaaaagaataa 26691262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 444 - 507
Target Start/End: Original strand, 26960931 - 26960994
Alignment:
Q  444 accccaaccaatatacttttatgaaaatttacttttaatcaagacatcacctcaaatagaataa 507  Q
    ||||||||||||||||||||||||||||||||||||||   | | ||||||||||| |||||||    
T  26960931 accccaaccaatatacttttatgaaaatttacttttaaatcatatatcacctcaaaaagaataa 26960994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 441 - 504
Target Start/End: Original strand, 1821534 - 1821597
Alignment:
Q  441 ttaaccccaaccaatatacttttatgaaaatttacttttaatcaagacatcacctcaaatagaa 504  Q
    |||| ||| ||||| ||||||||||||||||||||||| |||| ||||| ||||||||| ||||    
T  1821534 ttaatccccaccaacatacttttatgaaaatttactttcaatccagacaccacctcaaagagaa 1821597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 107
Target Start/End: Original strand, 43229198 - 43229272
Alignment:
Q  33 agagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagtagaatagaaagtaggaggaaagaaag 107  Q
    |||||||||||| ||| ||||||| |  |||||||||| |||||||||| ||||||||||| | |||||| ||||    
T  43229198 agagtagaaagtaagaggattgttttagttgtttggtataagagaaagtggaatagaaagttgaaggaaacaaag 43229272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 9 - 105
Target Start/End: Original strand, 20654667 - 20654763
Alignment:
Q  9 gaaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagtagaatagaaagtaggaggaaagaa 105  Q
    |||||||||| | ||||| |||   |||| |||||||||| ||||||| || |||||||||  |||||||| | || |||||||| |||||||||||    
T  20654667 gaaagattgtatgaggaacgaagaggagtggaaagtgagaggattgttttggttgtttggtttaagagaaaatggattagaaagttggaggaaagaa 20654763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 107
Target Start/End: Original strand, 23153612 - 23153697
Alignment:
Q  21 aaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagtagaatagaaagtaggaggaaagaaag 107  Q
    |||||| |||||  || ||||||||||||||||||| || |||||||||| || ||||||| |||||||  ||  ||||||||||||    
T  23153612 aaggaaagaaaggtagaagaaagtgagatgattgttttggttgtttggtataaaagaaagt-gaatagattgttagaggaaagaaag 23153697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 53
Target Start/End: Original strand, 35206599 - 35206628
Alignment:
Q  24 gaatgaaagagagtagaaagtgagatgatt 53  Q
    ||||||||||||||||||||||||||||||    
T  35206599 gaatgaaagagagtagaaagtgagatgatt 35206628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 53
Target Start/End: Complemental strand, 35210555 - 35210526
Alignment:
Q  24 gaatgaaagagagtagaaagtgagatgatt 53  Q
    ||||||||||||||||||||||||||||||    
T  35210555 gaatgaaagagagtagaaagtgagatgatt 35210526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 7e-20; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 41084981 - 41085079
Alignment:
Q  9 gaaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagtagaatagaaagtaggaggaaagaaag 107  Q
    |||||||||| || |||| |||| |||||||||||| ||| |||| || || |||||||||| |||||||||| ||||||||||| |||||||||||||    
T  41084981 gaaagattgtctagggaaagaaaaagagtagaaagtaagaggattattttggttgtttggtataagagaaagtggaatagaaagttggaggaaagaaag 41085079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 9 - 93
Target Start/End: Original strand, 29272742 - 29272826
Alignment:
Q  9 gaaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagtagaatagaaagt 93  Q
    |||||||||| ||||||| ||||||||||| ||||  ||| ||||||| || |||||||||| |||||||||||||||| |||||    
T  29272742 gaaagattgtctaaggaaagaaagagagtaaaaagcaagaggattgttttggttgtttggtacaagagaaagtagaataaaaagt 29272826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 22491829 - 22491731
Alignment:
Q  9 gaaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagtagaatagaaagtaggaggaaagaaag 107  Q
    |||||||||| |||||||  |||||||| ||||||| ||| ||||||| || |||||||||| |||||||||| || ||||||||   |||||||||||    
T  22491829 gaaagattgtctaaggaaaaaaagagagcagaaagtaagaggattgttttggttgtttggtacaagagaaagtggagtagaaagtttaaggaaagaaag 22491731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 81
Target Start/End: Complemental strand, 33055603 - 33055531
Alignment:
Q  9 gaaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagt 81  Q
    |||||||||| | ||||| | || |||||||||||||||||||||||| |  |||||||||| ||||||||||    
T  33055603 gaaagattgtatgaggaaagtaaaagagtagaaagtgagatgattgttttagttgtttggtataagagaaagt 33055531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 39878605 - 39878703
Alignment:
Q  9 gaaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagtagaatagaaagtaggaggaaagaaag 107  Q
    |||||||| | | ||||| |||| ||| |||||| ||||| ||||||| || |||||||||| || ||||| | ||||||||||| | |||||||||||    
T  39878605 gaaagattatatgaggaaagaaaaagaatagaaaatgagaggattgttttggttgtttggtataaaagaaaatggaatagaaagttgaaggaaagaaag 39878703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 25750296 - 25750221
Alignment:
Q  9 gaaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagtaga 84  Q
    |||||||||| | ||||| |||| ||||||||| |||||  |||| || || |||||||||| |||||||||||||    
T  25750296 gaaagattgtatgaggaaagaaaaagagtagaatgtgaggggattattttggttgtttggtataagagaaagtaga 25750221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 444 - 499
Target Start/End: Complemental strand, 28173045 - 28172990
Alignment:
Q  444 accccaaccaatatacttttatgaaaatttacttttaatcaagacatcacctcaaa 499  Q
    ||||||||||  ||||||||||||||||| ||||| || | |||||||||||||||    
T  28173045 accccaaccagcatacttttatgaaaattgactttcaaaccagacatcacctcaaa 28172990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 38477688 - 38477759
Alignment:
Q  9 gaaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaag 80  Q
    |||||||||||  ||||| ||| ||||||||||||||||||||||||  |  |||||||||| |||| ||||    
T  38477688 gaaagattgtgataggaaggaatgagagtagaaagtgagatgattgtattagttgtttggtataagaaaaag 38477759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 3765811 - 3765713
Alignment:
Q  9 gaaagattgtgtaaggaatgaaagagagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagtagaatagaaagtaggaggaaagaaag 107  Q
    |||||||||| ||||||| ||||  || |||||||| |||||| |||| || |||||| ||| |||||||| |   ||||||||| | |||||||||||    
T  3765811 gaaagattgtttaaggaaagaaaatgaatagaaagtaagatgaatgttttggttgtttagtataagagaaaatgagatagaaagttgaaggaaagaaag 3765713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 45223641 - 45223689
Alignment:
Q  33 agagtagaaagtgagatgattgttatgattgtttggtaaaagagaaagt 81  Q
    |||||||||||||||| ||||||| |  |||||||||| ||||||||||    
T  45223641 agagtagaaagtgagaggattgttttagttgtttggtataagagaaagt 45223689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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