View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18661_low_3 (Length: 581)
Name: NF18661_low_3
Description: NF18661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18661_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 520; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 18 - 570
Target Start/End: Original strand, 4137980 - 4138532
Alignment:
| Q |
18 |
atcttcaagacatgtctaacacttgaattttccatagttgtatcaactccatttgtgttattgatatacacaggnnnnnnntctggacattcacaaactc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4137980 |
atcttcaagacatgtctaacacttgaattttccatagttgtatcaactccatttgtgttattgatatacacaggaaaaaaatctggacattcacaaactc |
4138079 |
T |
|
| Q |
118 |
cggtatcatctgttgcaaagaaaggtataggatccactatccacttaacaaaatcctcacttttgtaaagaataatttttccttcatctccattttgagc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4138080 |
cggtatcatctgttgcaaagaaaggtataggatccactatccacttaacaaaatcctcacttttgtaaagaataatttttccttcatctccattttgagc |
4138179 |
T |
|
| Q |
218 |
accaatgattaccctccattttccatcctttccttgccatgcagttgaaggatctcggaattcaccgacttcaactccactaggtggagtcatcaaagga |
317 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4138180 |
accaataattaccctccattttccatcctttccttgccatgcagttgaaggatctcggaattcaccgacttcaactccactaggtggagtcatcaaagga |
4138279 |
T |
|
| Q |
318 |
ttttgaggatgtttttcccattcccttaagtaaggatcagacagattctttggcatggctaagttttgaacttggtgtctattttgatcaattcctgtat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4138280 |
ttttgaggatgtttttcccattcccttaagtaaggatcagacagattctttggcatggctaaattttgaacttggtgtctattttgatcaattcctgtat |
4138379 |
T |
|
| Q |
418 |
acaacatagcaggtttttcacctgggagtatagtggctgaacctgaccaacaactgtttatgtcaccaggtatagttggtacaatagcatcatttagatg |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4138380 |
acaacatagcaggtttttcacctgggagtatagtggctgaacctgaccaacaactgtttatgtcaccaggtatagttggtacaatagcatcatttagatg |
4138479 |
T |
|
| Q |
518 |
agtccaatctatgagatcatttgatatagaatgaccccataccattttctcat |
570 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4138480 |
agtccaatttatgagatcatttgatatagaatgaccccataccattttctcat |
4138532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 24 - 570
Target Start/End: Original strand, 4129270 - 4129816
Alignment:
| Q |
24 |
aagacatgtctaacacttgaattttccatagttgtatcaactccatttgtgttattgatatacacaggnnnnnnntctggacattcacaaactccggtat |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
4129270 |
aagacatgtctaacacttgaattttccatagttgtatccaccccatttgtactattgatatacacagtaaaaaaatccggacattcacaaactccggtat |
4129369 |
T |
|
| Q |
124 |
catctgttgcaaagaaaggtataggatccactatccacttaacaaaatcctcacttttgtaaagaataatttttccttcatctccattttgagcaccaat |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4129370 |
catctgttgcaaagaaaggtataggatccactatccacttaacaaaatcctcacttttgtaaagaataatttttccttcatctccattttgagcaccaat |
4129469 |
T |
|
| Q |
224 |
gattaccctccattttccatcctttccttgccatgcagttgaaggatctcggaattcaccgacttcaactccactaggtggagtcatcaaaggattttga |
323 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4129470 |
aattaccctccattttccatcctttccttgccatgcagttgaaggatctcggaattcaccgacttcaactccactaggtggagtcatcaaaggattttga |
4129569 |
T |
|
| Q |
324 |
ggatgtttttcccattcccttaagtaaggatcagacagattctttggcatggctaagttttgaacttggtgtctattttgatcaattcctgtatacaaca |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4129570 |
ggatgtttttcccattcccttaagtaaggatcagacagattctttggcatggctaaattttgaacttggtgtctattttgatcaattcctgtatacaaca |
4129669 |
T |
|
| Q |
424 |
tagcaggtttttcacctgggagtatagtggctgaacctgaccaacaactgtttatgtcaccaggtatagttggtacaatagcatcatttagatgagtcca |
523 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4129670 |
tagcaggtttttcacctgggagtatagtggctgaacctgaccaacaactgtttatgtcaccaggtatagttggtacaatagcatcatttagatgagtcca |
4129769 |
T |
|
| Q |
524 |
atctatgagatcatttgatatagaatgaccccataccattttctcat |
570 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4129770 |
atttatgagatcatttgatatagaatgaccccataccattttctcat |
4129816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 18 - 559
Target Start/End: Original strand, 4118072 - 4118613
Alignment:
| Q |
18 |
atcttcaagacatgtctaacacttgaattttccatagttgtatcaactccatttgtgttattgatatacacaggnnnnnnntctggacattcacaaactc |
117 |
Q |
| |
|
|||||||| ||||| |||||||||||||| |||| || |||||| || |||||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4118072 |
atcttcaaaacatgcctaacacttgaattatccacagatgtatccaccccatttgtactattgatatacacaggaaaaaagtctggacattcacaaactc |
4118171 |
T |
|
| Q |
118 |
cggtatcatctgttgcaaagaaaggtataggatccactatccacttaacaaaatcctcacttttgtaaagaataatttttccttcatctccattttgagc |
217 |
Q |
| |
|
| |||| |||||||||||| || || | |||| |||| |||| ||||| ||||||||||||| ||||||||| |||| |||||||| ||||||||||| |
|
|
| T |
4118172 |
cagtattatctgttgcaaaaaatggatttggattcactgtccaattaacgaaatcctcactttggtaaagaatggttttcccttcatcaccattttgagc |
4118271 |
T |
|
| Q |
218 |
accaatgattaccctccattttccatcctttccttgccatgcagttgaaggatctcggaattcaccgacttcaactccactaggtggagtcatcaaagga |
317 |
Q |
| |
|
||| | |||||||||||||||||||| ||||| ||||||||||||||||| |||| || | | | ||||||||||| ||||||||||||||| |||| |
|
|
| T |
4118272 |
accgacaattaccctccattttccatcttttccatgccatgcagttgaagggtctctaaagttatcctcttcaactccagtaggtggagtcatcacagga |
4118371 |
T |
|
| Q |
318 |
ttttgaggatgtttttcccattcccttaagtaaggatcagacagattctttggcatggctaagttttgaacttggtgtctattttgatcaattcctgtat |
417 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||| || | ||||||||||| || |||||||| ||||||| | ||| |||||||||||||| | |
|
|
| T |
4118372 |
ttttgagggtgtttttcccattcccttaagaaagcgtctgttagattctttggtatagctaagttctgaacttcattcttatagtgatcaattcctgtgt |
4118471 |
T |
|
| Q |
418 |
acaacatagcaggtttttcacctgggagtatagtggctgaacctgaccaacaactgtttatgtcaccaggtatagttggtacaatagcatcatttagatg |
517 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||| |||| | ||||| ||| |||| || ||||| |
|
|
| T |
4118472 |
acaaaatagcaggtttttcacctgggagtatagttgctgaacctgaccaacaactattgatgtcataaggtccacttggttcaagagcaatgttgagatg |
4118571 |
T |
|
| Q |
518 |
agtccaatctatgagatcatttgatatagaatgaccccatac |
559 |
Q |
| |
|
| |||||| |||||||||| |||| ||||||| ||||||| |
|
|
| T |
4118572 |
aatccaattaatgagatcataggatacagaatgagcccatac |
4118613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 18 - 565
Target Start/End: Original strand, 4142720 - 4143273
Alignment:
| Q |
18 |
atcttcaagacatgtctaacacttgaattttccatagttgtatcaactccatttgtgttattgatatacacaggnnnnnnntctggacattcacaaactc |
117 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| || |||||| || ||||| || |||||||||||||||| || |||||||||||||| | |
|
|
| T |
4142720 |
atcttaaagacatgtctaacacttgaattttccacagatgtatccaccccattagtactattgatatacacaggaaaaaaatccggacattcacaaacac |
4142819 |
T |
|
| Q |
118 |
cggtatcatctgttgcaaagaaaggtataggatccactatccacttaacaaaatcctcacttttgtaaagaataatttttccttcatctccattttgagc |
217 |
Q |
| |
|
||||| ||||||||||| |||| || ||||||| || ||||| |||||||||||||||||| ||||||||||| |||||||| || |||||| |||| |
|
|
| T |
4142820 |
cggtaccatctgttgcatagaatggattaggatctacaatccaattaacaaaatcctcacttctgtaaagaatagcttttccttgttcgccatttcgagc |
4142919 |
T |
|
| Q |
218 |
accaatgattaccctccattttccatcctttccttgccatgcagttgaaggatctcggaattcaccgacttcaactccactaggtggagtcatcaaagga |
317 |
Q |
| |
|
||| || | ||| |||||||||||||| ||||||||||||||||||||||| |||| || ||||| |||||||||||| |||||| || |||||||||| |
|
|
| T |
4142920 |
acctatcagtactctccattttccatcttttccttgccatgcagttgaagggtctctaaactcacctacttcaactccattaggtgcagccatcaaagga |
4143019 |
T |
|
| Q |
318 |
ttttgaggatgtttttcccattcccttaagtaaggatcagacagattctttggcatggctaagttttgaacttggtgtctattttgatcaat---tcctg |
414 |
Q |
| |
|
|||||||| |||||| |||||| |||| | ||| || || |||| ||| ||||| ||||||| ||||||||||||| | |||| || || ||||| |
|
|
| T |
4143020 |
ttttgagggtgttttatccattctattaacttagggtctgatagatccttcggcatagctaagtattgaacttggtgtgttttttcattgattaatcctg |
4143119 |
T |
|
| Q |
415 |
tatacaac------atagcaggtttttcacctgggagtatagtggctgaacctgaccaacaactgtttatgtcaccaggtatagttggtacaatagcatc |
508 |
Q |
| |
|
|||||||| ||| |||||| ||| || |||| ||| |||||||| ||||| | |||| || | ||||||| ||||||| ||||||||| |
|
|
| T |
4143120 |
tatacaacatatatataacaggttgttctccagggactattgtggctgagcctgagaagcaac---ttgtttcaccagcacaagttggttcaatagcatg |
4143216 |
T |
|
| Q |
509 |
atttagatgagtccaatctatgagatcatttgatatagaatgaccccataccatttt |
565 |
Q |
| |
|
||| | ||||||||||| ||||||||| || ||||| |||||||||||||||||||| |
|
|
| T |
4143217 |
attcaaatgagtccaatttatgagatctttggatattgaatgaccccataccatttt |
4143273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 354 - 471
Target Start/End: Original strand, 42875709 - 42875826
Alignment:
| Q |
354 |
tcagacagattctttggcatggctaagttttgaacttggtgtctattttgatcaattcctgtatacaacatagcaggtttttcacctgggagtatagtgg |
453 |
Q |
| |
|
||||||| ||| || || ||||||| |||||||||||| || ||||| ||||||||||||| || || || || ||||| ||||||| ||||| || | |
|
|
| T |
42875709 |
tcagacatatttttgggtatggctatgttttgaacttgatgattatttggatcaattcctgtgtataaaattgctggtttgccacctggaagtattgttg |
42875808 |
T |
|
| Q |
454 |
ctgaacctgaccaacaac |
471 |
Q |
| |
|
|||| ||||||||||||| |
|
|
| T |
42875809 |
ctgagcctgaccaacaac |
42875826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University