View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18661_low_6 (Length: 385)
Name: NF18661_low_6
Description: NF18661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18661_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 375
Target Start/End: Original strand, 9417623 - 9417994
Alignment:
| Q |
18 |
tgattaacttgtgagatttgcattgaatctaagaagaccgagttaccaattacatagtcaatgtttgaggattccaattttttgagtgattctttatcta |
117 |
Q |
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| T |
9417623 |
tgatttacttgtgagatttgcattgaatctaagaagaccgagttaccaattacatagtcaatgtttgaggattcaaattttttgagtgattctttatcta |
9417722 |
T |
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| Q |
118 |
ctacattatcac-aaaaaatatttaccaccctcaagaggatgggtttcacttcccacgaggatatacacgttggtcggagtcaactttgagaatgtggac |
216 |
Q |
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| T |
9417723 |
ctacattatcacaaaaaaatatttaccaccctcaagaggatgggttccacttcccacgaggatatacacgttggtcggagtcaactttgagaatgtggac |
9417822 |
T |
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| Q |
217 |
atgagtgtaataat---------------taattgtggctgctccatttgagtcagtcaacaataaacttgtactttacttgccactaaatttgcatgtg |
301 |
Q |
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| T |
9417823 |
atgagtgtaataatttacttaattataaataattgtgggtgctccatttgagtcagtcaacaataaacttgtactttacttggcactaaatttgcatgtg |
9417922 |
T |
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| Q |
302 |
aagacgcgtctcacaagcaaagaaattacaatagtaaattaagccaatg-aaccaaacccatgcatattcttcga |
375 |
Q |
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| T |
9417923 |
aagacgcgtctcacaagcaaagaa---acaatagtaaattaagccaatgaaaccaaacccatgcatttccttcga |
9417994 |
T |
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