View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18661_low_8 (Length: 375)

Name: NF18661_low_8
Description: NF18661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18661_low_8
NF18661_low_8
[»] chr5 (2 HSPs)
chr5 (1-375)||(34768917-34769290)
chr5 (290-369)||(20164389-20164470)
[»] chr4 (5 HSPs)
chr4 (240-374)||(13843084-13843222)
chr4 (240-371)||(13858367-13858500)
chr4 (290-333)||(16461437-16461480)
chr4 (281-367)||(28184330-28184418)
chr4 (298-334)||(53718242-53718278)
[»] chr2 (2 HSPs)
chr2 (243-375)||(26911140-26911276)
chr2 (298-367)||(32886542-32886613)
[»] chr8 (1 HSPs)
chr8 (299-375)||(3053362-3053440)
[»] chr1 (3 HSPs)
chr1 (292-362)||(44058192-44058263)
chr1 (299-366)||(23615464-23615531)
chr1 (299-366)||(23646757-23646825)
[»] chr7 (1 HSPs)
chr7 (299-366)||(44397418-44397487)
[»] chr3 (1 HSPs)
chr3 (281-334)||(12059096-12059149)
[»] chr6 (2 HSPs)
chr6 (292-369)||(1350522-1350601)
chr6 (301-366)||(24619364-24619431)


Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 34769290 - 34768917
Alignment:
Q  1 ctatatcaggccaaacctatttgtcatcctcactcctctatcacatttacccttccttctcctctcctttttccctacacatgtatatgaaggaactttt 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34769290 ctatatcatgccaaacctatttgtcatcctcactcctctatcacatttacccttccttctcctctcctttttccctacacatgtatatgaaggaactttt 34769191  T
Q  101 ggcaacaaaataaggttgcaactaaagtaatgcatgtcttcaaggacatacaataagaaatatatggtctcgggaagtgtggggcttgagtcagatgtat 200  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  34769190 ggcaacaaaataaggttgcaacgaaagtaatgcatgtcttcaaggacatacaataagaaatatatggtctcgggaagtgtggggctcgagccagatgtat 34769091  T
Q  201 ccagaatccgatgaagctgaaaaagtagtcgctataatctggagcaactcttatatagacaataacttaaataaattcatttgacacaaatacataaatg 300  Q
    |||||||||||||||||||||||||||||||||   || |||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||    
T  34769090 ccagaatccgatgaagctgaaaaagtagtcgct---atttggagcaactcttacatagacaataacttaaataaattcacttggcacaaatacataaatg 34768994  T
Q  301 ataaaattaaaaagtgaaatgatattaagtga--tgactttattattcatcttttaaattttatcatttatatgtgt 375  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||| |||||    
T  34768993 ataaaattaaaaagtgaaatgatattaagtgatgtgactttattattcatcttttaaattttattatttatgtgtgt 34768917  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 369
Target Start/End: Original strand, 20164389 - 20164470
Alignment:
Q  290 atacataaatgataaaattaaaaagtgaaatgatattaagtg--atgactttattattcatcttttaaattttatcatttat 369  Q
    ||||||| ||||||||||  |||||||||||||| ||||| |  ||||||| ||||||  ||||||| | ||||||||||||    
T  20164389 atacatagatgataaaatgtaaaagtgaaatgatgttaagcgatatgacttaattatttctcttttatactttatcatttat 20164470  T

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Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 240 - 374
Target Start/End: Original strand, 13843084 - 13843222
Alignment:
Q  240 tggagcaactcttatatagacaataacttaaataaa-ttcattt-gacacaaatacataaatgataaaattaaaaagtgaaatgatattaagtgatg--a 335  Q
    ||||||||||||||||||||||  ||| |||||||| || |||| || ||| | ||||| || |||||||| ||||||||||| ||||||| |||||  |    
T  13843084 tggagcaactcttatatagacataaacctaaataaagtttatttcgatacacacacatagatcataaaatttaaaagtgaaataatattaaatgatgtga 13843183  T
Q  336 ctttattattcatcttttaaattttatcatttatatgtg 374  Q
    | ||||||||  |||||||||||||||||||||||||||    
T  13843184 cattattatttctcttttaaattttatcatttatatgtg 13843222  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 240 - 371
Target Start/End: Original strand, 13858367 - 13858500
Alignment:
Q  240 tggagcaactcttatatagacaataacttaaataaattcattt-gacacaaatacataaatgataaaattaaaaagtgaaatgatattaagtgatg--ac 336  Q
    ||||||||||||||||||||||  ||| ||||||||||||||| |||||| | |||| ||| |||||||| ||||||||||| || ||||| | ||  |     
T  13858367 tggagcaactcttatatagacataaacctaaataaattcatttcgacacatacacatgaatcataaaatttaaaagtgaaataat-ttaagcggtgtcat 13858465  T
Q  337 tttattattcatcttttaaattttatcatttatat 371  Q
     ||||||||  ||||||||||||||||||||||||    
T  13858466 attattatttttcttttaaattttatcatttatat 13858500  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 290 - 333
Target Start/End: Complemental strand, 16461480 - 16461437
Alignment:
Q  290 atacataaatgataaaattaaaaagtgaaatgatattaagtgat 333  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||    
T  16461480 atacatagatgataaaatttaaaagtgaaatgatattaagtgat 16461437  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 367
Target Start/End: Original strand, 28184330 - 28184418
Alignment:
Q  281 ttgacacaaatacataaatgataaaatt-aaaaagtgaaatgatattaagtgatg--actttattattcatcttttaaattttatcattt 367  Q
    ||||||||||||||||| |||||||||| |||||| ||||  ||||||| |||||  | | |||||||  ||||||||||||||||||||    
T  28184330 ttgacacaaatacataa-tgataaaatttaaaaagagaaacaatattaactgatgtgattatattatttttcttttaaattttatcattt 28184418  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 334
Target Start/End: Original strand, 53718242 - 53718278
Alignment:
Q  298 atgataaaattaaaaagtgaaatgatattaagtgatg 334  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  53718242 atgataaaatttaaaaatgaaatgatattaagtgatg 53718278  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 243 - 375
Target Start/End: Original strand, 26911140 - 26911276
Alignment:
Q  243 agcaactcttatatagacaataacttaaat-aaattcatttga-cacaaatacataaatgataaaattaaaaagtgaaatgatattaagtg--atgactt 338  Q
    ||||||||||||| ||| |  ||| ||||| |||||||||||| |||||||||||| || |||||||| |||||||||||| |||||| ||   ||||||    
T  26911140 agcaactcttatagagagacaaacctaaattaaattcatttgaacacaaatacatagataataaaatttaaaagtgaaatgttattaaatggcgtgactt 26911239  T
Q  339 tattattcatcttttaaattttatcatttatatgtgt 375  Q
     |||||| |||||||||||||||| |||||| |||||    
T  26911240 aattatttatcttttaaattttattatttatgtgtgt 26911276  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 367
Target Start/End: Original strand, 32886542 - 32886613
Alignment:
Q  298 atgataaaattaaaaagtgaaatgatattaagtga--tgactttattattcatcttttaaattttatcattt 367  Q
    ||||||||||| |||| ||||||||||||||||||  |||||| | ||||  || |||||||||||||||||    
T  32886542 atgataaaatttaaaaatgaaatgatattaagtgatgtgacttaactatttctcatttaaattttatcattt 32886613  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 375
Target Start/End: Complemental strand, 3053440 - 3053362
Alignment:
Q  299 tgataaaattaaaaagtgaaatgatattaagtgatg--actttattattcatcttttaaattttatcatttatatgtgt 375  Q
    |||||||||| ||||| |||||  ||||||||||||  |||  ||||||  |||||||||||||||||||||| |||||    
T  3053440 tgataaaatttaaaagagaaattttattaagtgatgtgactaaattatttctcttttaaattttatcatttatgtgtgt 3053362  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 292 - 362
Target Start/End: Original strand, 44058192 - 44058263
Alignment:
Q  292 acataaatgataaaattaaaaagtgaaatgatattaagtgat-gactttattattcatcttttaaattttat 362  Q
    ||||| ||||||||||| ||||||||||||||||| |||||| ||||  ||||||   ||||||||||||||    
T  44058192 acatagatgataaaatttaaaagtgaaatgatatttagtgatggactaaattatttcccttttaaattttat 44058263  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 366
Target Start/End: Complemental strand, 23615531 - 23615464
Alignment:
Q  299 tgataaaattaaaaagtgaaatgatattaagtga-tgactttattattcatcttttaaattttatcatt 366  Q
    |||||||||| |||||  |||||||||||||||| |||||  ||||||  |||||||||||||||||||    
T  23615531 tgataaaatttaaaagataaatgatattaagtgagtgactaaattatt-ttcttttaaattttatcatt 23615464  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 366
Target Start/End: Complemental strand, 23646825 - 23646757
Alignment:
Q  299 tgataaaattaaaaagtgaaatgatattaagtga-tgactttattattcatcttttaaattttatcatt 366  Q
    |||||||||| |||||  |||||||||||||||| |||||  ||||||  || ||||||||||||||||    
T  23646825 tgataaaatttaaaagataaatgatattaagtgagtgactaaattatttttcatttaaattttatcatt 23646757  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 366
Target Start/End: Original strand, 44397418 - 44397487
Alignment:
Q  299 tgataaaattaaaaagtgaaatgatattaagtga--tgactttattattcatcttttaaattttatcatt 366  Q
    |||||||||| ||||| ||||| |||||||||||  |||||  ||||||  |||||||||||||||||||    
T  44397418 tgataaaatttaaaagagaaatcatattaagtgatgtgactaaattatttctcttttaaattttatcatt 44397487  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 334
Target Start/End: Complemental strand, 12059149 - 12059096
Alignment:
Q  281 ttgacacaaatacataaatgataaaattaaaaagtgaaatgatattaagtgatg 334  Q
    |||||||| |||||||||||||||||||  |||| ||||  |||||||||||||    
T  12059149 ttgacacacatacataaatgataaaattttaaagagaaacaatattaagtgatg 12059096  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 369
Target Start/End: Complemental strand, 1350601 - 1350522
Alignment:
Q  292 acataaatgataaaattaaaaagtgaaatgatattaagtgat--gactttattattcatcttttaaattttatcatttat 369  Q
    ||||| |||||||||||  ||||||||| |||||||||||||  || || |||||   || |||||||||||||||||||    
T  1350601 acatagatgataaaattttaaagtgaaacgatattaagtgatatgatttaattatatctcatttaaattttatcatttat 1350522  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 366
Target Start/End: Complemental strand, 24619431 - 24619364
Alignment:
Q  301 ataaaattaaaaagtgaaatgatattaagtgatg--actttattattcatcttttaaattttatcatt 366  Q
    |||||||| |||||  ||||||||||||||||||  |||  ||||||  |||||||||||||||||||    
T  24619431 ataaaatttaaaagaaaaatgatattaagtgatgtaactaaattatttctcttttaaattttatcatt 24619364  T

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