View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18662_high_1 (Length: 1031)
Name: NF18662_high_1
Description: NF18662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18662_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 756; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 756; E-Value: 0
Query Start/End: Original strand, 18 - 805
Target Start/End: Original strand, 16625119 - 16625906
Alignment:
| Q |
18 |
aaacccatcaagaccaattgtgggaatagccacattactgacatgggagcaattccttgtggagttggattagaatttgctacatctcttctaacttttt |
117 |
Q |
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| T |
16625119 |
aaacccatcaagaccaattgtgggaatagccacattactgacataggagcaattccttgtggagttggattagaatttgctacatctcttctaacttttt |
16625218 |
T |
|
| Q |
118 |
caaccaaaccagctacaatcattgatataatggagaacaccatgccaattccaattctttggaggagagtgattcctccttcattctttgtaatttttct |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
16625219 |
caaccaaaccagctacaatcattgatataatggagaacaccatgccaattccaattctttgaaggagagtgattcctccttcattctttgtaatttttct |
16625318 |
T |
|
| Q |
218 |
tagtgatggcacgcatatccggtcgtagaatgggacccataggcctatgacgatcaacgatatgactccgagtgaaccagctggaatttggaattttggt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
16625319 |
tagtgatggcacgcatatccggtcgtagaatgggacccataggcctatgacgatcaacgatatgactccgagtgaaccggctgggatttggaattttggt |
16625418 |
T |
|
| Q |
318 |
ccgaggtgtcggtccattttcatggcttgtgatacaataaatgttccttgttgcgccatcgtggtgaaacctaggataccggccgcccaaattggtaatg |
417 |
Q |
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| T |
16625419 |
ccgaggtgtcggtccattttcatggcttgtgatacaataaatgttccttgttgcgccatcgcagtgaaacctaggataccggccgcccaaattggtaatg |
16625518 |
T |
|
| Q |
418 |
ttcttgctaagcattttacctcttctacttgttggatgctcacaaggttccattgatttacgatggttccctctggatttaaatcaccctccattactag |
517 |
Q |
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| T |
16625519 |
ttcttgctaagcattttacctcttctacttgttggatgctcacaaggttccattgatttacgatggttccatctggatttaaatcaccctccattactag |
16625618 |
T |
|
| Q |
518 |
agcagctttatccaaaaccctagattatacatataaatttatagttagattttagatcaaatgtaataaataataacttaaatatctgtttgctaaatat |
617 |
Q |
| |
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| T |
16625619 |
agcagctttatccaaaaccctagattatacatataaatttatagttagattttagatcaaatgtaataaataataacttaaatatctgtttgctaaatat |
16625718 |
T |
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| Q |
618 |
agaaaaagtagtatttggtgttttaaaaaatgttaatctcatttttcacaatttgacttgagaaatgaagtttcacaattctagcaatataatttgttgt |
717 |
Q |
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| T |
16625719 |
agaaaaagtagtatttggtgttttaaaaaatgttaatctcatttttcacaatttgacttgagaaatgaaatttcacaattctagcaatataatttgttgt |
16625818 |
T |
|
| Q |
718 |
cgaaatttgatatcaaatttgtgtctgaaaataatataactctttaagatatagatatcaacttttttgtaaagagtagtgctactta |
805 |
Q |
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| T |
16625819 |
cgaaatttgatatcaaatttgtgtctgaaaataatataactctttaagatatagatatcaacttttttgtaaagagtagtgctactta |
16625906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 854 - 953
Target Start/End: Original strand, 16625905 - 16626004
Alignment:
| Q |
854 |
tagcaaaattattgttggaaagagaaaataatgaatnnnnnnnnnnnnggtcatccaacggtcataaacaagtcgtgcacattcgtgcttgtatggccat |
953 |
Q |
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| T |
16625905 |
tagcaaaattattgtgggaaagagaaaataatgaataaaaagaaaaaaggtcatccaacggtcataaacaagtcgttcgcattcatgcttgtatggccat |
16626004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 8e-36; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 54 - 510
Target Start/End: Complemental strand, 25275499 - 25275043
Alignment:
| Q |
54 |
actgacatgggagcaattccttgtggagttggattagaatttgctacatctcttctaactttttcaaccaaaccagctacaatcattgatataatggaga |
153 |
Q |
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|||||||||||||||||| | ||||| |||| ||||| |||||| ||||||||||| || ||||| || ||||| |||||||| || | ||| |||| |
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| T |
25275499 |
actgacatgggagcaatttcaagtggacttgggttagattttgctgaatctcttctaatcttctcaacaaagccagcaacaatcatagaaagaatagaga |
25275400 |
T |
|
| Q |
154 |
acaccatgccaattccaattctttggaggagagtgattcctccttcattctttgtaatttttcttagtgatggcacgca-tatccggtcgtagaatggga |
252 |
Q |
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| | |||||||| |||||||||||| || || || || ||| ||| || || || ||||||||||| | |||||| | ||| || || ||||| | |
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| T |
25275399 |
ataacatgccaactccaattctttgaagtagggtaataccttcttttttattagtcatttttcttagggttggcactaaatatttc-tcatataatggaa |
25275301 |
T |
|
| Q |
253 |
cccataggcctatgacgatcaacgatatgactccgagtgaaccagctggaatttggaattttggtccgaggtgtcggtccattttcatggcttgtgatac |
352 |
Q |
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| T |
25275300 |
gccataaagctatggtgattaatgatatgactcccattgaaccagctgggatttgaaatttgggtcctaagtgtctgtccattttcaaggcttgtaatac |
25275201 |
T |
|
| Q |
353 |
aataaatgttccttgttgcgccatcgtggtgaaacctaggataccggccgcccaaattggtaatgttcttgctaagcattttacctcttctacttgttgg |
452 |
Q |
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| | |||||||||||||| || || | |||| || || || || || ||||||||||| || ||||||||||| ||||| ||||||||||||||||| |
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| T |
25275200 |
agtgaatgttccttgttgtgctatggatgtgagactaagaatcccagctgcccaaattggaaaagttcttgctaaacatttaacctcttctacttgttga |
25275101 |
T |
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| Q |
453 |
atgctcacaaggttccattgatttacgatggttccctctggatttaaatcaccctcca |
510 |
Q |
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||||| |||| ||||| | ||||| ||| | || |||| |||||| |||||||||| |
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| T |
25275100 |
atgcttgcaagtttccacttgtttactatgctcccatctgaatttaattcaccctcca |
25275043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 816 - 885
Target Start/End: Complemental strand, 8672558 - 8672489
Alignment:
| Q |
816 |
aaagcctacgaatttcgacgacacgacaatcaggtagatagcaaaattattgttggaaagagaaaataat |
885 |
Q |
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|||||| |||||||||||||||||||||||||||| | | |||| || | ||| |||||||||||||||| |
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| T |
8672558 |
aaagcccacgaatttcgacgacacgacaatcaggtcgttggcaagataaatgtgggaaagagaaaataat |
8672489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 935 - 973
Target Start/End: Complemental strand, 8672440 - 8672402
Alignment:
| Q |
935 |
ttcgtgcttgtatggccatcgtaccataaagcattttcc |
973 |
Q |
| |
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| T |
8672440 |
ttcgtgcttatatggccatcgtgccataaagcattttcc |
8672402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 7e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 787 - 885
Target Start/End: Complemental strand, 46832040 - 46831941
Alignment:
| Q |
787 |
taaagagtagtgctacttaacacgactctaaa-gcctacgaatttcgacgacacgacaatcaggtagatagcaaaattattgttggaaagagaaaataat |
885 |
Q |
| |
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||||||||||||||| || |||||||||||| ||| |||||||||||||||||| ||||||||| ||| |||| || | ||| |||||||||||||||| |
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| T |
46832040 |
taaagagtagtgctatgtagcacgactctaaaagcccacgaatttcgacgacacggcaatcaggttgatggcaagataaatgtgggaaagagaaaataat |
46831941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 790 - 885
Target Start/End: Complemental strand, 46832227 - 46832131
Alignment:
| Q |
790 |
agagtagtgctacttaacacgactctaaa-gcctacgaatttcgacgacacgacaatcaggtagatagcaaaattattgttggaaagagaaaataat |
885 |
Q |
| |
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|||||||||||| || |||||||||||| ||| ||||||||| |||||||| ||||||||| ||| |||| || | ||| | |||||||||||||| |
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| T |
46832227 |
agagtagtgctatgtagcacgactctaaaagcccacgaatttcaacgacacggcaatcaggtcgatggcaagataaatgtggaaaagagaaaataat |
46832131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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