View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18662_high_13 (Length: 268)
Name: NF18662_high_13
Description: NF18662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18662_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 35 - 250
Target Start/End: Complemental strand, 2355133 - 2354918
Alignment:
| Q |
35 |
aactttcataagtagtttgtggataagcattccttttgtatatttccagataataattgcattgatgtcaaagttttcatgctatgttaggcttgtgcta |
134 |
Q |
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| T |
2355133 |
aactttcataagtagtttgtgcataagcattccatttgtttatttccagataataattgcattggtgtcaaagttttcatgctatgttagtcttgtgcta |
2355034 |
T |
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| Q |
135 |
ttttcctactggctggggatagtctttaccacatgataatgactttgttacatgaaaaaccgtataatagccatgcttataggttgagttattttgtttt |
234 |
Q |
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| T |
2355033 |
ttttcctactggctgggggtagtctttatcacataataataactttgttacatgaaaaaccgtataatagccatgcttataggttgagttattttgtttt |
2354934 |
T |
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| Q |
235 |
tctgatcactcaattc |
250 |
Q |
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| T |
2354933 |
tctgatcactcaattc |
2354918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 2355182 - 2355145
Alignment:
| Q |
1 |
attaagcgctgaattctagagtatagacatgttaaact |
38 |
Q |
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| T |
2355182 |
attaagctctgaattctagagtatagacatgttaaact |
2355145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 35 - 93
Target Start/End: Complemental strand, 38144781 - 38144723
Alignment:
| Q |
35 |
aactttcataagtagtttgtggataagcattccttttgtatatttccagataataattg |
93 |
Q |
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| T |
38144781 |
aactttcataagtagtttgtgcataagcattcctttcgtatatttccagataataattg |
38144723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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