View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18662_high_14 (Length: 264)
Name: NF18662_high_14
Description: NF18662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18662_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 13 - 248
Target Start/End: Original strand, 36405306 - 36405541
Alignment:
| Q |
13 |
tactgctacaaccttgagagtcaccacaacaacaattcaccactgccgcagagcagcaacccgcatgttcctccattacaaactcacttcaacatcagaa |
112 |
Q |
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| T |
36405306 |
tactgctacaaccttgagagtcaccacaacaacaattcaccactgccgcagagcagcaacccgcatgttcctccattacaaactcacttcaacatcagaa |
36405405 |
T |
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| Q |
113 |
aagcctaaatatcattaaaaatcagcagttagagccaaaagggtatttgcaaaacagcctcaatttatgccaaattcttttgtcatttggatataatgtg |
212 |
Q |
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| T |
36405406 |
aagcctaaatatcattaaaaatcagcagttagagccaaaaggttatttgcaaaacagcctcaatttatgccaaattcttttgtcatttggatataatgtg |
36405505 |
T |
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| Q |
213 |
tgtgccaatccagactaagtattttattagcagttc |
248 |
Q |
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| T |
36405506 |
tgtgccaatccagactaagtattttattagcagttc |
36405541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 249
Target Start/End: Original strand, 36427784 - 36427849
Alignment:
| Q |
185 |
aattcttttgtcatttggatataatgtgtgtgccaatccagact-aagtattttattagcagttct |
249 |
Q |
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| T |
36427784 |
aattcttttgtcatttggatattctctgtgtgccaatccagactgaagtgttttatcagcagttct |
36427849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 249
Target Start/End: Original strand, 36417799 - 36417871
Alignment:
| Q |
175 |
atttatgccaaattcttttgtcatttggatataatgtgtgtgccaatccagact-aagtattttattagcagttct |
249 |
Q |
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| T |
36417799 |
atttatgccaa-ttctttggtcatttggatat--tctgtgtgccaatccagactgaagtgttttatcagcagttct |
36417871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 36426815 - 36426908
Alignment:
| Q |
13 |
tactgctacaaccttgagagtcaccacaacaacaattcaccactgccgcagagcagcaacccgcatgttcctccattacaaactcacttcaaca |
106 |
Q |
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||||||||||||||||||| ||||| ||| | | ||||||||||| ||||| |||||||| ||||||| | ||| || | ||||||||||| |
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| T |
36426815 |
tactgctacaaccttgagaatcaccccaagactagttcaccactgcatcagagaagcaacccaaatgttcccctatttcacagtcacttcaaca |
36426908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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