View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18662_high_2 (Length: 664)
Name: NF18662_high_2
Description: NF18662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18662_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 551; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 19 - 656
Target Start/End: Original strand, 43395952 - 43396592
Alignment:
| Q |
19 |
gattacttaggcgttgagattctgagacgcagaagtgatttgacagactaaaactttcgtatttactaatgcaagttttttacgtcttccaattctgtct |
118 |
Q |
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| T |
43395952 |
gattacttaggcgttgagattctgagacgcagaagtgatttgacagactaaaactttcgtatttactaatgcaagttttttacgtcttccaattctgtct |
43396051 |
T |
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| Q |
119 |
gttttatgtaataacataactcttctctccctgagcacaccatctttaattcctctttatctcttatcagtttgcttataaatttaaagaaaaagttagg |
218 |
Q |
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| T |
43396052 |
gttttatgtaataacattactcttccctccctgagcacaccatctttatttcctctttatctcttatcagtttgcttataaatttaaagaaaaagttagg |
43396151 |
T |
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| Q |
219 |
catactatataaactataagcagataatttggacaccacagaacnnnnnnncacagtgagatactgttatttttgaactgccaaa-----gagtaaaata |
313 |
Q |
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| T |
43396152 |
catactatataaactataagcagataatttggacaccacagaacaaaaaaactcagtgagatactgttatttttgaactgccaaattaaagagtaaaata |
43396251 |
T |
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| Q |
314 |
tcttggtatagctgagattataattgaaggagaggggagagatttatatttcaatgctttgtttttggttgagaggaggtgaggggagataatagtgaat |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
43396252 |
tcttggtatagctgagattataattgaaggagaggggagagatttat--ttcaatgctttgtttttggttgagagtaggctaggggagataatagtgaat |
43396349 |
T |
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| Q |
414 |
taaaattaggggtgtggttacgttgcgatctttgatattgcagacaaatgcagttgatgcagatgcaatgtagctgcggagaccactaaagtcattatgt |
513 |
Q |
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| T |
43396350 |
taaaattaggggtgtggttgcgttgcgatctttgatattgcagacaaatgcagttgatgcagatgcaatgtagctgcggagaccactaaagtcattatgt |
43396449 |
T |
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| Q |
514 |
tgtggtcgtgcatataattgttgacatcacacgggaaggagcaagatcttccaattccatctcaccaataaaattattaaaaagatacatctccaataat |
613 |
Q |
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| T |
43396450 |
tgtggtcgtgcatatagttgttgacatcacacgggaaggagcgagatcttccaattccatctcaccaataaaattattaaaaagatacatctccaataat |
43396549 |
T |
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| Q |
614 |
tgaccacttgaagtttcttcattaattccccttctttcatctc |
656 |
Q |
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| T |
43396550 |
tgaccacttgaagtttcttcattaattccccttctttcatctc |
43396592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 43400093 - 43400190
Alignment:
| Q |
19 |
gattacttaggcgttgagattctgagacgcagaagtgatttgacagactaaaactttcgtatttactaatgcaagttttttacgtcttccaattctgt |
116 |
Q |
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|||||||| |||||||||||||||||||||||||| |||||| ||||||| ||||||| |||||| || |||| |||||||| || ||||| |||||| |
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| T |
43400093 |
gattacttgggcgttgagattctgagacgcagaagcgatttggcagactagaactttcatatttagtactgcaggttttttatgtattccagttctgt |
43400190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 37410436 - 37410369
Alignment:
| Q |
19 |
gattacttaggcgttgagattctgagacgcagaagtgatttgacagactaaaactttcgtatttacta |
86 |
Q |
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||||||||||| ||||||||||||||||||||||| ||||||||| | || ||||||| ||||||||| |
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| T |
37410436 |
gattacttaggtgttgagattctgagacgcagaagcgatttgacaaagtagaactttcatatttacta |
37410369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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