View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18662_high_4 (Length: 431)
Name: NF18662_high_4
Description: NF18662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18662_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 18 - 421
Target Start/End: Complemental strand, 33704251 - 33703848
Alignment:
| Q |
18 |
cttatgtgtaccctaattgaataaggatcttttgcactcatcaagcgtaactctatcactaaaattgacgtgatgctcctccacgatattcggatatgtg |
117 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33704251 |
cttatgtgtacccatattgaataaggatcttttgcactcatcaagcgtaactctagcactaaaattgacgtgatgctcctccacgatattcggatatgtg |
33704152 |
T |
|
| Q |
118 |
gaccaagtgacaataaaatcacaaataggtgcatcgtctttaaataagttagtgtagaaattcttcacattattcttcaaggtttctggatcatcaaccc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33704151 |
gaccaagtgacaataaaatcacaaataggtgcatcgtctttaaataagttagtgtagaaattcttcacattattcttcaaggtttctagatcatcaaccc |
33704052 |
T |
|
| Q |
218 |
agactccaacatcatttcgatgatggttttggagtaatagtacttcatgtttctatcaccatctacaatccacttgctacactacttttgaaaccaaaga |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33704051 |
agactccaacatcatttcgatgatggtttttgagtaatagtacttcatgtttctatcaccatctacaatccacttgctacactacttttgaaaccaaaga |
33703952 |
T |
|
| Q |
318 |
tactcttcttagtaaagggttatggtaagcttgtccagaagttccttttcaaggttctcaaggtaatcactatacccataattatgactgttctggatct |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33703951 |
tactcttcttagtaaagggttatggtaagcttctccagaagttccatttcaaggttctcaagataatcactatacccataattatgactgttttggatct |
33703852 |
T |
|
| Q |
418 |
catt |
421 |
Q |
| |
|
|||| |
|
|
| T |
33703851 |
catt |
33703848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 237 - 421
Target Start/End: Complemental strand, 46425855 - 46425671
Alignment:
| Q |
237 |
atgatggttttggagtaatagtacttcatgtttctatcaccatctacaatccacttgctacactacttttgaaaccaaagatactcttcttagtaaaggg |
336 |
Q |
| |
|
||||| ||||||| | ||||||||| |||| | ||| |||||| | ||||||||||||| ||||||||||||| | | | ||||||| |||||||| |
|
|
| T |
46425855 |
atgattgttttggcatgatagtactttgtgttccgatctccatctgcgatccacttgctacgagacttttgaaaccacaaacattcttcttggtaaaggg |
46425756 |
T |
|
| Q |
337 |
ttatggtaagcttgtccagaagttccttttcaaggttctcaaggtaatcactatacccataattatgactgttctggatctcatt |
421 |
Q |
| |
|
| || | ||| | || |||| ||||||||||| | ||||||| ||| ||||||||||||||| |||||||| || |||||||| |
|
|
| T |
46425755 |
taatcgcaagttgctcttgaagatccttttcaagttcctcaaggaaatgactatacccataattttgactgttttgaatctcatt |
46425671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 237 - 409
Target Start/End: Original strand, 54815150 - 54815322
Alignment:
| Q |
237 |
atgatggttttggagtaatagtacttcatgtttctatcaccatctacaatccacttgctacactacttttgaaaccaaagatactcttcttagtaaaggg |
336 |
Q |
| |
|
||||| ||||||| | ||||||||| |||| | ||| |||||| ||||||||||||||| ||||||||||||| | | | ||||||| |||||||| |
|
|
| T |
54815150 |
atgattgttttggcatgatagtactttgtgttccgatctccatctgcaatccacttgctacgagacttttgaaaccacaaacattcttcttggtaaaggg |
54815249 |
T |
|
| Q |
337 |
ttatggtaagcttgtccagaagttccttttcaaggttctcaaggtaatcactatacccataattatgactgtt |
409 |
Q |
| |
|
| | | ||| | || |||| ||||||||||| | ||||||| ||| ||||||||||||||| |||||||| |
|
|
| T |
54815250 |
taaccgcaagttgctcttgaagatccttttcaagttcctcaaggaaatgactatacccataattttgactgtt |
54815322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 179
Target Start/End: Complemental strand, 46426029 - 46425944
Alignment:
| Q |
94 |
tcctccacgatattcggatatgtggaccaagtgacaataaaatcacaaataggtgcatcgtctttaaataagttagtgtagaaatt |
179 |
Q |
| |
|
|||||||| | |||||||||||||| ||||| || ||| |||||| |||||| | ||| |||||||| ||||| || |||||||| |
|
|
| T |
46426029 |
tcctccacaacattcggatatgtggtccaagaaacgatataatcacgaataggagtatcttctttaaacaagtttgtatagaaatt |
46425944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 236 - 412
Target Start/End: Complemental strand, 23947005 - 23946829
Alignment:
| Q |
236 |
gatgatggttttggagtaatagtacttcatgtttctatcaccatctacaatccacttgctacactacttttgaaaccaaagatactcttcttagtaaagg |
335 |
Q |
| |
|
|||||| |||||||| | ||| ||||| | |||| |||||||||| ||||||||||||||| ||||||| |||||||| ||||||||| ||||||| |
|
|
| T |
23947005 |
gatgattgttttggaatgataatacttagtatttcgatcaccatctgcaatccacttgctacgagacttttggaaccaaagtcactcttcttggtaaagg |
23946906 |
T |
|
| Q |
336 |
gttatggtaagcttgtccagaagttccttttcaaggttctcaaggtaatcactatacccataattatgactgttctg |
412 |
Q |
| |
|
||||| | ||| | || |||| ||||| ||||||||||||||| | | ||| ||||||||||| ||||| ||||| |
|
|
| T |
23946905 |
gttatagcaagttgctcgtgaagctccttctcaaggttctcaaggaagttactgtacccataattgtgactattctg |
23946829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 237 - 412
Target Start/End: Complemental strand, 5306021 - 5305846
Alignment:
| Q |
237 |
atgatggttttggagtaatagtacttcatgtttctatcaccatctacaatccacttgctacactacttttgaaaccaaagatactcttcttagtaaaggg |
336 |
Q |
| |
|
||||| |||||||| | ||| ||||| | |||| |||||||||| ||||||||||||||| ||||||| |||||||| ||||||||| |||||||| |
|
|
| T |
5306021 |
atgattgttttggaatgataatacttagtatttcgatcaccatctgcaatccacttgctacgagacttttggaaccaaaggcactcttcttggtaaaggg |
5305922 |
T |
|
| Q |
337 |
ttatggtaagcttgtccagaagttccttttcaaggttctcaaggtaatcactatacccataattatgactgttctg |
412 |
Q |
| |
|
|||| | ||| | || |||| ||||| ||||||||||||||| | | ||| ||||||||||| ||||| ||||| |
|
|
| T |
5305921 |
ttatagcaagttgctcgtgaagctccttctcaaggttctcaaggaagttactgtacccataattgtgactattctg |
5305846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 267 - 412
Target Start/End: Original strand, 50955435 - 50955580
Alignment:
| Q |
267 |
tttctatcaccatctacaatccacttgctacactacttttgaaaccaaagatactcttcttagtaaagggttatggtaagcttgtccagaagttcctttt |
366 |
Q |
| |
|
|||| |||||||| | ||||||||||||||| ||||||| |||||||| ||||||||| |||||||||||| | ||| | || |||| ||||| | |
|
|
| T |
50955435 |
tttcgatcaccatatgcaatccacttgctacgagacttttggaaccaaaggcactcttcttggtaaagggttatagcaagttgctcgtgaagctccttct |
50955534 |
T |
|
| Q |
367 |
caaggttctcaaggtaatcactatacccataattatgactgttctg |
412 |
Q |
| |
|
|||||||||||||| | ||| ||||||||||| ||||| ||||| |
|
|
| T |
50955535 |
caaggttctcaaggaagctactgtacccataattgtgactattctg |
50955580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University