View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18662_high_6 (Length: 378)
Name: NF18662_high_6
Description: NF18662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18662_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 73 - 356
Target Start/End: Original strand, 15018388 - 15018671
Alignment:
| Q |
73 |
tgatagaattaatttcgttaagaataagaaaggacaaaagttgataatcgtatccaaacttcaaaataattcacgattcaagtcatcaatcaaaatgaca |
172 |
Q |
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| T |
15018388 |
tgatagaattaatttcgttaagaataagaaaggacaaaagttgataatcgtatccaaacttcaaaataattcacgattcaagtcatcaatcaaaatgaca |
15018487 |
T |
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| Q |
173 |
aaagtgactggctacacaaagctcaagtgttcaacccctaaaaaatcataatctataataataaatcgagattcatcagaataaagtaaggttcatgttg |
272 |
Q |
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| T |
15018488 |
acagtgactggctacacaaagctcaagtgttcaacccctaaaaaatcataatctataataataaatcgagattcatcagaataaagtaaggttcatgtta |
15018587 |
T |
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| Q |
273 |
cggctcaacaatcggacagaaagaattgagatccatgctgtgattcatgtcaaattagatacacgcaatttgcataggttaggt |
356 |
Q |
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| T |
15018588 |
cggctcaacaatcggacagaaagaattgagatccatgctgtgattcatatcaaattagatacgcgcaatttgcataggttaggt |
15018671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 73 - 356
Target Start/End: Original strand, 15025506 - 15025789
Alignment:
| Q |
73 |
tgatagaattaatttcgttaagaataagaaaggacaaaagttgataatcgtatccaaacttcaaaataattcacgattcaagtcatcaatcaaaatgaca |
172 |
Q |
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| T |
15025506 |
tgatagaattaatttcgttaagaataagaaaggacaaaagttgataatcgtatccaaacttcaaaataattcacgattcaagtcatcaatcaaaatgaca |
15025605 |
T |
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| Q |
173 |
aaagtgactggctacacaaagctcaagtgttcaacccctaaaaaatcataatctataataataaatcgagattcatcagaataaagtaaggttcatgttg |
272 |
Q |
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| T |
15025606 |
acagtgactggctacacaaagctcaagtgttcaacccctaaaaaatcataatctataataataaatcgagattcatcagaataaagtaaggttcatgtta |
15025705 |
T |
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| Q |
273 |
cggctcaacaatcggacagaaagaattgagatccatgctgtgattcatgtcaaattagatacacgcaatttgcataggttaggt |
356 |
Q |
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| T |
15025706 |
cggctcaacaatcggacagaaagaattgagatccatgctgtgattcatatcaaattagatacgcgcaatttgcataggttaggt |
15025789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 110 - 356
Target Start/End: Original strand, 15043669 - 15043916
Alignment:
| Q |
110 |
aagttgata-atcgtatccaaacttcaaaataattcacgattcaagtcatcaatcaaaatgacaaaagtgactggctacacaaagctcaagtgttcaacc |
208 |
Q |
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| T |
15043669 |
aagttgatatatcgtatccaaacttcaaaataattcacgattcaagtcatcaatcaaaatgacaaaagtgactggctacacaaagctcaagtgttcaacc |
15043768 |
T |
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| Q |
209 |
cctaaaaaatcataatctataataataaatcgagattcatcagaataaagtaaggttcatgttgcggctcaacaatcggacagaaagaattgagatccat |
308 |
Q |
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| T |
15043769 |
cctaaaaaatcataatctataataataaatcgagattcatcagaataaattaaggttcatgttgcggctcaaaaatcggacagaaagaattgagatccac |
15043868 |
T |
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| Q |
309 |
gctgtgattcatgtcaaattagatacacgcaatttgcataggttaggt |
356 |
Q |
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| T |
15043869 |
gctgtgattcatgtcaaattagatacaagcaattttcataggttaggt |
15043916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 117 - 248
Target Start/End: Original strand, 15003929 - 15004060
Alignment:
| Q |
117 |
taatcgtatccaaacttcaaaataattcacgattcaagtcatcaatcaaaatgacaaaagtgactggctacacaaagctcaagtgttcaacccctaaaaa |
216 |
Q |
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| T |
15003929 |
taatcgtatccaaacttcaaaataattcacgattcaagtcatcaatcaaaatgacaacagtgaccggctacactgcgctcaagtgttcaacccctaaaaa |
15004028 |
T |
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| Q |
217 |
atcataatctataataataaatcgagattcat |
248 |
Q |
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| T |
15004029 |
atcataatctgtaataataaattgagattcat |
15004060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 264 - 335
Target Start/End: Original strand, 15004056 - 15004127
Alignment:
| Q |
264 |
ttcatgttgcggctcaacaatcggacagaaagaattgagatccatgctgtgattcatgtcaaattagataca |
335 |
Q |
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| T |
15004056 |
ttcatgttgcagttcaacaatcaaacagaaagaattgagatccatgctgctattcatgtcaaattagataca |
15004127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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