View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18662_high_7 (Length: 371)
Name: NF18662_high_7
Description: NF18662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18662_high_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 351
Target Start/End: Original strand, 2355145 - 2355478
Alignment:
| Q |
18 |
agtttagcatgtctatactctagaattcagagcttaatcaataatgaaaggaggcacgtaaaaataaaactaaattgaagagttgccttgcagtagagag |
117 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2355145 |
agtttaacatgtctatactctagaattcagagcttaatcaataacgaaaggaggcatgtaaaaataaaactaaattgaagagttgccttgtagtagagag |
2355244 |
T |
|
| Q |
118 |
atttaccgcatttgcatcgtgattgtcaatgcctgggattgatgtaacaactttaaggtaaaagttcattccttgcaccaactgcttcctcttcaaaacc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2355245 |
atttaccgcatttgcatcgtgattgtcaatgcctgggattgatgtaacaactttaaggtaaaagttcattccttgcaccaactgcttcctcttcaaaacc |
2355344 |
T |
|
| Q |
218 |
ataacaaaatttaaacatcaatttgctagtttcacttcatatgtgattagtagcagctaaatagtatgaaattttattgtaaaatcaatgagctgacctc |
317 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2355345 |
ataacaaaattcaaacatcaatttgctagtttcacttcatatgtgattagtagcagctaaatagtatgaaattttattgtaaaatcaatgagctgacctc |
2355444 |
T |
|
| Q |
318 |
acctcagccttcagtttttcttcaattctctgct |
351 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |
|
|
| T |
2355445 |
acctcagctttcagtttttcttcaattctctgct |
2355478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 223 - 351
Target Start/End: Complemental strand, 2222689 - 2222561
Alignment:
| Q |
223 |
aaaatttaaacatcaatttgctagtttcacttcatatgtgattagtagcagctaaatagtatgaaattttattgtaaaatcaatgagctgacctcacctc |
322 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2222689 |
aaaattcaaacatcaatttgctagtttcacttcatatgtgattagtagcagctaaatagtatgaaattttattgtaaaatcaatgagctgacctcacctc |
2222590 |
T |
|
| Q |
323 |
agccttcagtttttcttcaattctctgct |
351 |
Q |
| |
|
||| ||||||||||||||||||||||||| |
|
|
| T |
2222589 |
agctttcagtttttcttcaattctctgct |
2222561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University