View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18662_low_11 (Length: 316)
Name: NF18662_low_11
Description: NF18662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18662_low_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 17 - 287
Target Start/End: Original strand, 363492 - 363762
Alignment:
| Q |
17 |
tggtgccattcctttgtcagtcacagggagaaggttactgacaccaccttcctctcgggctccaccaaggagccctcctgaattacagcaatcaccaata |
116 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
363492 |
tggtgtcattcctttgtcagtgacagggagaaggttactgacaccaccttcctctcgggctccaccaaggagccctcctgaatgacagcaatcaccaata |
363591 |
T |
|
| Q |
117 |
aacaaaaaagaaatttcatctaaaagatccccaaagatctcattgatgtcgtgctctgtaaaacaaaacaaaaagacagacacgcatgtcagttcctttt |
216 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
363592 |
aacaaaaaacaaatttcatctaaaagatccccaaagatctcattgatgtcgtgctctgtaaaacaaaacaaaaagacagacacgcatgttagttcctttt |
363691 |
T |
|
| Q |
217 |
cttacttccctaatatatcatttattttcttttaatgttgttaattaagctttaaccacgtagaatcatgt |
287 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
363692 |
cttatttccctaatatatcatttattttcttttaatgttgttaattgagctttaactacgtagaatcatgt |
363762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 29 - 125
Target Start/End: Complemental strand, 41023732 - 41023636
Alignment:
| Q |
29 |
tttgtcagtcacagggagaaggttactgacaccaccttcctctcgggctccaccaaggagccctcctgaattacagcaatcaccaataaacaaaaaa |
125 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||| ||||| |||||||| |||| |||||||||||||| || |||||||||||||||||||| |
|
|
| T |
41023732 |
tttgtcagtgatagggagaaggttactgacaccacctgcctcttaggctccacaaaggtgccctcctgaattatagaaatcaccaataaacaaaaaa |
41023636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University