View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18662_low_15 (Length: 276)
Name: NF18662_low_15
Description: NF18662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18662_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 3 - 260
Target Start/End: Original strand, 6855168 - 6855425
Alignment:
| Q |
3 |
cagataaaacaccaccatatgcaaattttacaatccttctgcttctaggtaactttgatctcttgtactctgtgggccttaaacatggaatcccccctta |
102 |
Q |
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| T |
6855168 |
cagataaaacaccaccatatgcaaattttacaatccttctgcttctaggtaactttgatctcttgtactctgtgggccttaaacatggaatcccccctta |
6855267 |
T |
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| Q |
103 |
tgaaccctctttccattaacaatgcattttggtccactagctctcttcctagttgtcggtaaacaagcttcccatcaagggttttgacaacccggactgt |
202 |
Q |
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| T |
6855268 |
tgaaccctctttccattaacaatgcattttggtccactagctctcttcctagttgtcggtaaacaagcttcccatcgagggttttgacaacccggactgt |
6855367 |
T |
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| Q |
203 |
atataactacatttccaccatacttattcccaccaacatgaaaacaagcattaacaat |
260 |
Q |
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| T |
6855368 |
atataactacatttccaccatacttattcccaccaacatgaaaacaagcattaacaat |
6855425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 172
Target Start/End: Complemental strand, 24242532 - 24242462
Alignment:
| Q |
103 |
tgaaccctctttccattaacaatgcattttggtccactagctctcttcctagttgtc-ggtaaacaagctt |
172 |
Q |
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| T |
24242532 |
tgaatcctctttccagtaacagggcatttaggtccactagctctcttcttggttgtctgataaacaagctt |
24242462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 24245048 - 24244968
Alignment:
| Q |
3 |
cagataaaacaccaccatatgcaaattttacaatccttctgcttctaggtaactttgatctcttgtactctgtgggcctta |
83 |
Q |
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|||||||||| |||||||| ||| || ||| |||| ||| ||||||||||| | |||||||||||||| ||||| |||| |
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| T |
24245048 |
cagataaaactccaccataggcacgattcacagtcctcctgtttctaggtaacctagatctcttgtactcagtgggtctta |
24244968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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