View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18662_low_21 (Length: 250)

Name: NF18662_low_21
Description: NF18662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18662_low_21
NF18662_low_21
[»] chr4 (6 HSPs)
chr4 (13-250)||(36404760-36404997)
chr4 (49-227)||(36397861-36398039)
chr4 (53-227)||(36412120-36412296)
chr4 (53-227)||(36417451-36417627)
chr4 (52-227)||(36426277-36426455)
chr4 (132-227)||(36388165-36388260)


Alignment Details
Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 36404760 - 36404997
Alignment:
Q  13 tgaactaggtaagatatcccctcctactgnnnnnnncttctaaatttgacagcacttatgtatagtttaaacttatttggacttgtatctttatatcagc 112  Q
    |||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36404760 tgaactaggtaagatatcccctcctactgtttttttcttctaaatttgacagcacttatgtatagtttaaacttatttggacttgtatctttatatcagc 36404859  T
Q  113 taattacaacnnnnnnngcaaaggagcacttgacaaaaagaggttggctgcaattctggtagcttctattgttgcaattgtcatcctcctctcctgtgta 212  Q
    ||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36404860 taattacaacaaaaaaagcaaaggagcacttgacaaaaagaggttggctgcaattctggtagcttctattgttgcaattgtcatcctcctctcctgtgta 36404959  T
Q  213 aattacatgtggaagnnnnnnncaaagggtatgcgatt 250  Q
    |||||||||||||||       ||||||||||||||||    
T  36404960 aattacatgtggaagaaaaaaacaaagggtatgcgatt 36404997  T

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Target: chr4; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 49 - 227
Target Start/End: Original strand, 36397861 - 36398039
Alignment:
Q  49 cttctaaatttgacagcacttatgtatagtttaaacttatttggacttgtatctttatatcagctaattacaacnnnnnnngcaaaggagcacttgacaa 148  Q
    ||||||||||||||| ||||||||| |||||||||||| | ||||||||| ||||  |||||||||||||||||       |||||||||  ||||| ||    
T  36397861 cttctaaatttgacaccacttatgtgtagtttaaacttctctggacttgtttcttcttatcagctaattacaacaaaaaaagcaaaggagtccttgataa 36397960  T
Q  149 aaagaggttggctgcaattctggtagcttctattgttgcaattgtcatcctcctctcctgtgtaaattacatgtggaag 227  Q
    |||||||||||||| |||| |||||| ||| || |||||||| ||||| |||||||| ||||| |||||||||||||||    
T  36397961 aaagaggttggctgtaattatggtagtttcaatagttgcaatcgtcattctcctctcttgtgtgaattacatgtggaag 36398039  T

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Target: chr4; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 53 - 227
Target Start/End: Original strand, 36412120 - 36412296
Alignment:
Q  53 taaatttgacagcacttat--gtatagtttaaacttatttggacttgtatctttatatcagctaattacaacnnnnnnngcaaaggagcacttgacaaaa 150  Q
    ||||||||||| ||||| |  || |||||||||||| ||||||||||| | ||  |||||||||||||||||       |||||||||  ||||| ||||    
T  36412120 taaatttgacaccacttttaagtgtagtttaaacttctttggacttgttttttcttatcagctaattacaacaaaaaaagcaaaggagtccttgataaaa 36412219  T
Q  151 agaggttggctgcaattctggtagcttctattgttgcaattgtcatcctcctctcctgtgtaaattacatgtggaag 227  Q
    ||||||| ||||||||||| ||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||    
T  36412220 agaggttagctgcaattcttgtagcttctatagttgcaattgtcatcctcctcttctgtgtgaattacatgtggaag 36412296  T

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Target: chr4; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 53 - 227
Target Start/End: Original strand, 36417451 - 36417627
Alignment:
Q  53 taaatttgacagcacttat--gtatagtttaaacttatttggacttgtatctttatatcagctaattacaacnnnnnnngcaaaggagcacttgacaaaa 150  Q
    ||||||||||| ||||| |  || |||||||||||| ||||||||||| | ||  |||||||||||||||||       |||||||||  ||||| ||||    
T  36417451 taaatttgacaccacttttaagtgtagtttaaacttctttggacttgttttttcttatcagctaattacaacaaaaaaagcaaaggagtccttgataaaa 36417550  T
Q  151 agaggttggctgcaattctggtagcttctattgttgcaattgtcatcctcctctcctgtgtaaattacatgtggaag 227  Q
    ||||||| ||||||||||| ||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||    
T  36417551 agaggttagctgcaattcttgtagcttctatagttgcaattgtcatcctcctcttctgtgtgaattacatgtggaag 36417627  T

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Target: chr4; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 52 - 227
Target Start/End: Original strand, 36426277 - 36426455
Alignment:
Q  52 ctaaatttgacagcacttatgtatagtttaaacttatttggacttgtatctttata---tcagctaattacaacnnnnnnngcaaaggagcacttgacaa 148  Q
    |||||||||||| ||||||||| |||||||||||| ||||||||||| ||||  ||   |||||||| ||| ||       |||||||||  |||| |||    
T  36426277 ctaaatttgacaccacttatgtgtagtttaaacttctttggacttgtttcttcttagcgtcagctaactacgacaaaaaaagcaaaggagtccttggcaa 36426376  T
Q  149 aaagaggttggctgcaattctggtagcttctattgttgcaattgtcatcctcctctcctgtgtaaattacatgtggaag 227  Q
    ||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||    
T  36426377 aaagaggttagctgcaattcttgtagcttctatagttgcaattgtcatcctcctcttctgtgtgaattacatgtggaag 36426455  T

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Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 132 - 227
Target Start/End: Original strand, 36388165 - 36388260
Alignment:
Q  132 aaaggagcacttgacaaaaagaggttggctgcaattctggtagcttctattgttgcaattgtcatcctcctctcctgtgtaaattacatgtggaag 227  Q
    |||||||  ||||| ||||||||||||||||||||||| |||||||||||  ||||||||||| |||||||||||||||| || ||||||||||||    
T  36388165 aaaggagttcttgataaaaagaggttggctgcaattcttgtagcttctataattgcaattgtcctcctcctctcctgtgtgaactacatgtggaag 36388260  T

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