View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18662_low_22 (Length: 248)
Name: NF18662_low_22
Description: NF18662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18662_low_22 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 5035936 - 5035717
Alignment:
| Q |
1 |
ggaagcagataaaatagcagcagcagaggaaaaccctaagaaaggaaaaagaacaaaaatggcaacagcaacagaagcaacacgttcaaatttaccagag |
100 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||||||| |||||| ||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5035936 |
ggaagcagagaaaatagcagcaacagaggaaaaccctaagaaacgaaaaa---------tgggaacagaaacagaagcaacacgttcaaatttaccagag |
5035846 |
T |
|
| Q |
101 |
gatttatgggaacacatcttcaaattcctcaacgacgaggaaaacaacaccttcaaccttcctcgtcctgatgggaatctaggtttcaccgataaccccc |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| |||||||| ||||| |||| ||||||| |||||||||||||||| ||||| |||||| |
|
|
| T |
5035845 |
gatttatgggaaaacatcttcaaattcctcaacgacgaggagaacaacacattcaaacttcttcgtcctaatgggaatctaggttttgccgatcaccccc |
5035746 |
T |
|
| Q |
201 |
gcagaataaggtctctctaccacgtctca |
229 |
Q |
| |
|
||||||||| ||||||||| ||||||||| |
|
|
| T |
5035745 |
gcagaataaagtctctctatcacgtctca |
5035717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 78 - 230
Target Start/End: Complemental strand, 2526003 - 2525851
Alignment:
| Q |
78 |
caacacgttcaaatttaccagaggatttatgggaacacatcttcaaattcctcaacgacgaggaaaacaacaccttcaaccttcctcgtcctgatgggaa |
177 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
2526003 |
caacacgttcatatttaccagaggagttatgggaacacatcttcaaattcctcaacgacgaggacaacaacaccttcaaccttcttcgtcttgatgggaa |
2525904 |
T |
|
| Q |
178 |
tctaggttt-caccgataacccccgcagaataaggtctctctaccacgtctcaa |
230 |
Q |
| |
|
| ||||||| || | ||| || ||||||||| | |||||||||||||||||| |
|
|
| T |
2525903 |
tataggttttcaac-atatccagcgcagaataggaactctctaccacgtctcaa |
2525851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 11 - 161
Target Start/End: Complemental strand, 2536801 - 2536654
Alignment:
| Q |
11 |
aaaatagcagcagcagaggaaaaccctaagaaaggaaaaagaacaaaaatggcaacagcaacagaagcaacacgttcaaatttaccagaggatttatggg |
110 |
Q |
| |
|
||||||| |||||||| | ||||||||| |||| |||||||||||||| | ||||||||||| ||||||||||| ||||||||||||| ||||||| |
|
|
| T |
2536801 |
aaaatagaagcagcagtgaaaaaccctaggaaacgaaaaagaacaaaattttcaacagcaacac---caacacgttcatatttaccagaggagttatggg |
2536705 |
T |
|
| Q |
111 |
aacacatcttcaaattcctcaacgacgaggaaaacaacaccttcaaccttc |
161 |
Q |
| |
|
|| ||||||||||||| |||||| ||||||| | ||||||||||| ||||| |
|
|
| T |
2536704 |
aatacatcttcaaatttctcaaccacgaggacagcaacaccttcagccttc |
2536654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 2486547 - 2486430
Alignment:
| Q |
18 |
cagcagcagaggaaaaccctaagaaaggaaaaagaacaaaaatggcaacagcaacagaagcaacacgttcaaatttaccagaggatttatgggaacacat |
117 |
Q |
| |
|
|||| |||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||| | || |||| |||||||| |||||||| | || |
|
|
| T |
2486547 |
cagccgcagcggaaaaccataagaaacgaaaaagaacaaaaatggcaacagcaacagaagcaacatgctcgtatttcccagaggaattatgggagcgaat |
2486448 |
T |
|
| Q |
118 |
cttcaaattcctcaacga |
135 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
2486447 |
ctttaaattcctcaacga |
2486430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 78 - 157
Target Start/End: Complemental strand, 2491320 - 2491241
Alignment:
| Q |
78 |
caacacgttcaaatttaccagaggatttatgggaacacatcttcaaattcctcaacgacgaggaaaacaacaccttcaac |
157 |
Q |
| |
|
||||||||||| |||||||||| | ||||||||||||||| |||||||||| ||||||||||| ||||||| ||||||| |
|
|
| T |
2491320 |
caacacgttcatgtttaccagagaagttatgggaacacatcctcaaattcctgaacgacgaggacaacaacatcttcaac |
2491241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 84 - 136
Target Start/End: Original strand, 2625296 - 2625348
Alignment:
| Q |
84 |
gttcaaatttaccagaggatttatgggaacacatcttcaaattcctcaacgac |
136 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2625296 |
gttcagatttaccagaggagttatgggaacacatcttcaaattcctcaacgac |
2625348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 140
Target Start/End: Complemental strand, 2519473 - 2519366
Alignment:
| Q |
30 |
aaaaccctaagaaaggaaaaagaacaaaaatggcaacagcaacagaagcaacacgttcaaatttaccagaggatttatgggaacacatcttcaaattcct |
129 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||||| || || || ||||| ||||||| ||||| |||||||| | ||| |||| ||||| |
|
|
| T |
2519473 |
aaaaccctaagaaaccaaaaagaacaaaaatggcagcagcagcaa---catcatgttcatatttaccggaggagttatgggagcgcattgtcaagttcct |
2519377 |
T |
|
| Q |
130 |
caacgacgagg |
140 |
Q |
| |
|
||||||||||| |
|
|
| T |
2519376 |
caacgacgagg |
2519366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 136
Target Start/End: Complemental strand, 2467738 - 2467679
Alignment:
| Q |
77 |
gcaacacgttcaaatttaccagaggatttatgggaacacatcttcaaattcctcaacgac |
136 |
Q |
| |
|
|||||| ||||| |||||||| |||| |||||||| | |||||||||||||||||||||| |
|
|
| T |
2467738 |
gcaacatgttcatatttaccaaaggagttatgggagcgcatcttcaaattcctcaacgac |
2467679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 138
Target Start/End: Original strand, 5101944 - 5102005
Alignment:
| Q |
77 |
gcaacacgttcaaatttaccagaggatttatgggaacacatcttcaaattcctcaacgacga |
138 |
Q |
| |
|
|||||| ||||| ||||||| || || |||||||| | |||||||||||||||||||||||| |
|
|
| T |
5101944 |
gcaacaggttcatatttaccggatgagttatgggagcgcatcttcaaattcctcaacgacga |
5102005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 132
Target Start/End: Complemental strand, 2547655 - 2547613
Alignment:
| Q |
90 |
atttaccagaggatttatgggaacacatcttcaaattcctcaa |
132 |
Q |
| |
|
|||||||||| || |||||||| |||||||||||||||||||| |
|
|
| T |
2547655 |
atttaccagatgagttatgggagcacatcttcaaattcctcaa |
2547613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 129
Target Start/End: Original strand, 2380052 - 2380097
Alignment:
| Q |
84 |
gttcaaatttaccagaggatttatgggaacacatcttcaaattcct |
129 |
Q |
| |
|
|||||||||||||||| || ||||||||| ||||| |||||||||| |
|
|
| T |
2380052 |
gttcaaatttaccagatgagttatgggaatacatcatcaaattcct |
2380097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University