View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18662_low_3 (Length: 507)
Name: NF18662_low_3
Description: NF18662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18662_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 47286752 - 47286503
Alignment:
| Q |
1 |
acacttggtgttccacaggttctgttctctcaaacggtacattagtccaaaccggtggtttcaacgatggtgagcgtcgaattcgaatgttcacaccatg |
100 |
Q |
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| T |
47286752 |
acacttggtgttcctcaggttctgttctctcaaacggtacattagtccaaaccggtggtttcaacgatggtgagcgtcgaattcgaatgttcacaccatg |
47286653 |
T |
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| Q |
101 |
tttcaacgaaaattgtgattggattgaattcccaagttacttatccgaaagaagatggtatgcaacaaatcaaatactaccagataatcgcattataatt |
200 |
Q |
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| T |
47286652 |
tttcaacgaaaattgtgattggattgaattcccaagttacttatccgaaagaagatggtatgcaacaaatcaaatactaccagataatcgcattataatt |
47286553 |
T |
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| Q |
201 |
attggtggtagaagacaattcaactatgaattcattcctaaaacaacgac |
250 |
Q |
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| T |
47286552 |
attggtggtagaagacaattcaactatgaattcattcctaaaacaacgac |
47286503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 296 - 493
Target Start/End: Complemental strand, 47286457 - 47286260
Alignment:
| Q |
296 |
ccaagaaactaacgatccaagcgaaaacaacttatatccattcgttcatcttctacctaatggaaaccttttcattttcgcaaacacacgatccatttta |
395 |
Q |
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| T |
47286457 |
ccaagaaactaacgatccaagcgaaaacaacttatatccattcgttcatcttctacctaatggaaaccttttcattttcgcaaacacacgatccatttta |
47286358 |
T |
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| Q |
396 |
tttgattacaaacaaaacgtcgctgttaaagaatttcctgagattccaggtggtgatcctcataactatcctagttcaggatcatctgttcttcttcc |
493 |
Q |
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| T |
47286357 |
tttgattacaaacaaaacgtcgttgttaaagaatttcctgagattccaggtggtgatcctcataactatcctagttcaggatcatctgttcttcttcc |
47286260 |
T |
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