View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18662_low_7 (Length: 415)

Name: NF18662_low_7
Description: NF18662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18662_low_7
NF18662_low_7
[»] chr7 (36 HSPs)
chr7 (20-311)||(12840618-12840908)
chr7 (176-314)||(422704-422842)
chr7 (173-306)||(28359003-28359137)
chr7 (175-306)||(23721065-23721196)
chr7 (166-304)||(39079682-39079821)
chr7 (174-306)||(41709939-41710071)
chr7 (190-314)||(30610852-30610973)
chr7 (185-284)||(41387462-41387561)
chr7 (166-308)||(41389219-41389361)
chr7 (185-295)||(12305118-12305228)
chr7 (173-314)||(16015452-16015593)
chr7 (186-314)||(16015763-16015891)
chr7 (185-304)||(39079994-39080113)
chr7 (175-295)||(3973082-3973202)
chr7 (178-308)||(46870238-46870369)
chr7 (176-314)||(14596235-14596373)
chr7 (208-314)||(32000772-32000878)
chr7 (185-283)||(46753059-46753157)
chr7 (173-314)||(14595924-14596065)
chr7 (173-314)||(25589114-25589254)
chr7 (187-270)||(1663692-1663774)
chr7 (208-270)||(257354-257416)
chr7 (208-306)||(10406637-10406735)
chr7 (188-270)||(28909967-28910049)
chr7 (221-285)||(14092255-14092319)
chr7 (221-285)||(14402273-14402337)
chr7 (173-244)||(30899093-30899164)
chr7 (208-263)||(43167987-43168042)
chr7 (208-270)||(1661278-1661340)
chr7 (220-270)||(40121705-40121755)
chr7 (208-270)||(41670823-41670885)
chr7 (190-263)||(10193470-10193543)
chr7 (208-244)||(14092014-14092050)
chr7 (208-244)||(14402032-14402068)
chr7 (228-304)||(21033884-21033960)
chr7 (208-248)||(41670539-41670579)
[»] chr5 (24 HSPs)
chr5 (173-306)||(4796278-4796411)
chr5 (173-314)||(31973477-31973618)
chr5 (175-314)||(16275164-16275302)
chr5 (173-272)||(31973210-31973309)
chr5 (187-284)||(15844297-15844394)
chr5 (178-277)||(28362467-28362566)
chr5 (223-306)||(30587837-30587920)
chr5 (188-270)||(873783-873865)
chr5 (188-242)||(17435353-17435407)
chr5 (188-270)||(28010203-28010285)
chr5 (203-304)||(904806-904907)
chr5 (187-242)||(20319056-20319110)
chr5 (208-270)||(27760346-27760408)
chr5 (188-270)||(37995721-37995803)
chr5 (196-269)||(24918107-24918180)
chr5 (188-269)||(24994007-24994088)
chr5 (211-270)||(1028180-1028239)
chr5 (220-270)||(13843664-13843714)
chr5 (220-270)||(13843980-13844030)
chr5 (220-270)||(17016180-17016230)
chr5 (208-270)||(27760030-27760092)
chr5 (204-306)||(33105529-33105631)
chr5 (220-268)||(20811421-20811469)
chr5 (265-313)||(38603955-38604003)
[»] chr8 (20 HSPs)
chr8 (175-308)||(38887023-38887156)
chr8 (195-314)||(30590390-30590509)
chr8 (173-306)||(39590619-39590750)
chr8 (197-304)||(26642531-26642638)
chr8 (175-313)||(34529909-34530047)
chr8 (185-304)||(26639043-26639162)
chr8 (175-283)||(28488406-28488514)
chr8 (188-284)||(44933154-44933250)
chr8 (175-284)||(25971348-25971457)
chr8 (188-270)||(23027592-23027674)
chr8 (188-270)||(23027915-23027997)
chr8 (188-270)||(31766936-31767018)
chr8 (188-248)||(3184012-3184072)
chr8 (208-271)||(20298602-20298665)
chr8 (208-270)||(21085235-21085297)
chr8 (173-285)||(15157002-15157114)
chr8 (228-303)||(16213190-16213265)
chr8 (228-304)||(30602874-30602948)
chr8 (220-272)||(36997133-36997185)
chr8 (208-248)||(40754399-40754439)
[»] chr1 (36 HSPs)
chr1 (177-308)||(41590278-41590407)
chr1 (173-314)||(34626817-34626958)
chr1 (173-308)||(18998631-18998766)
chr1 (175-313)||(19810742-19810879)
chr1 (166-306)||(7907895-7908036)
chr1 (175-302)||(51515636-51515764)
chr1 (174-313)||(19811055-19811194)
chr1 (185-302)||(6868065-6868182)
chr1 (173-313)||(33248369-33248514)
chr1 (173-313)||(33268541-33268686)
chr1 (175-306)||(12581394-12581526)
chr1 (189-300)||(40566323-40566434)
chr1 (178-284)||(13978510-13978616)
chr1 (223-285)||(51188886-51188948)
chr1 (188-270)||(33879865-33879947)
chr1 (188-270)||(33964308-33964390)
chr1 (175-244)||(14623129-14623198)
chr1 (190-276)||(19459660-19459746)
chr1 (175-314)||(12410327-12410467)
chr1 (188-268)||(45264598-45264678)
chr1 (259-314)||(19810001-19810056)
chr1 (188-270)||(2697418-2697500)
chr1 (188-270)||(4022212-4022294)
chr1 (230-308)||(18998370-18998448)
chr1 (212-270)||(19937130-19937188)
chr1 (208-270)||(31305666-31305728)
chr1 (226-284)||(41590605-41590663)
chr1 (175-284)||(5087831-5087940)
chr1 (208-270)||(8520180-8520242)
chr1 (186-228)||(11636199-11636241)
chr1 (189-313)||(17557767-17557890)
chr1 (208-270)||(20735477-20735539)
chr1 (185-302)||(8000443-8000565)
chr1 (208-248)||(8520344-8520384)
chr1 (208-248)||(15013480-15013520)
chr1 (208-248)||(35926330-35926370)
[»] chr4 (31 HSPs)
chr4 (174-308)||(52043127-52043261)
chr4 (173-313)||(26942916-26943055)
chr4 (166-305)||(48046269-48046409)
chr4 (173-263)||(26942681-26942771)
chr4 (174-305)||(30491006-30491134)
chr4 (175-256)||(26942473-26942554)
chr4 (180-308)||(46332587-46332710)
chr4 (175-285)||(22870575-22870685)
chr4 (188-270)||(53738295-53738377)
chr4 (183-280)||(3137021-3137118)
chr4 (197-306)||(23311521-23311629)
chr4 (176-273)||(54595145-54595242)
chr4 (173-235)||(3137285-3137347)
chr4 (188-270)||(15665087-15665170)
chr4 (187-270)||(29669765-29669847)
chr4 (187-270)||(36558553-36558636)
chr4 (188-270)||(43972290-43972372)
chr4 (208-270)||(45427339-45427401)
chr4 (176-285)||(3137706-3137814)
chr4 (196-244)||(44898835-44898883)
chr4 (187-270)||(991138-991221)
chr4 (187-270)||(29669450-29669532)
chr4 (176-307)||(54595427-54595558)
chr4 (192-263)||(56509548-56509619)
chr4 (220-270)||(50857979-50858029)
chr4 (220-270)||(50858295-50858345)
chr4 (220-270)||(53740149-53740199)
chr4 (209-262)||(45427031-45427084)
chr4 (187-248)||(49544267-49544328)
chr4 (208-268)||(43971994-43972054)
chr4 (220-272)||(52214582-52214634)
[»] chr3 (23 HSPs)
chr3 (177-308)||(34250401-34250532)
chr3 (173-308)||(51917800-51917935)
chr3 (173-301)||(662646-662774)
chr3 (174-308)||(54861446-54861580)
chr3 (178-285)||(39225097-39225208)
chr3 (175-314)||(25568419-25568558)
chr3 (176-314)||(35035023-35035161)
chr3 (175-306)||(351102-351236)
chr3 (173-270)||(14170086-14170184)
chr3 (32-125)||(39175533-39175622)
chr3 (188-263)||(24860154-24860229)
chr3 (220-314)||(45016876-45016970)
chr3 (208-272)||(13769376-13769440)
chr3 (208-272)||(45443235-45443299)
chr3 (187-270)||(41380658-41380741)
chr3 (197-272)||(46139176-46139251)
chr3 (208-270)||(43101458-43101520)
chr3 (208-270)||(54368994-54369056)
chr3 (208-263)||(50203951-50204006)
chr3 (192-270)||(3985712-3985790)
chr3 (220-270)||(4255477-4255527)
chr3 (208-270)||(4256189-4256251)
chr3 (220-270)||(44573293-44573343)
[»] chr2 (26 HSPs)
chr2 (179-314)||(18183392-18183527)
chr2 (166-304)||(26760879-26761018)
chr2 (185-306)||(21373915-21374045)
chr2 (176-284)||(43203479-43203588)
chr2 (175-286)||(1544073-1544185)
chr2 (223-308)||(14407958-14408044)
chr2 (175-308)||(5511851-5511983)
chr2 (175-275)||(9889407-9889508)
chr2 (185-314)||(39583432-39583561)
chr2 (187-270)||(15820188-15820271)
chr2 (186-277)||(33070355-33070446)
chr2 (188-270)||(5424843-5424925)
chr2 (220-282)||(11339771-11339833)
chr2 (188-248)||(43688531-43688591)
chr2 (220-283)||(3003981-3004044)
chr2 (176-215)||(26580192-26580231)
chr2 (208-270)||(18901951-18902013)
chr2 (185-285)||(14522432-14522532)
chr2 (220-272)||(21213970-21214022)
chr2 (208-263)||(7877799-7877854)
chr2 (187-262)||(17509043-17509118)
chr2 (220-270)||(3976558-3976608)
chr2 (220-270)||(43169209-43169259)
chr2 (176-249)||(45636302-45636376)
chr2 (185-270)||(20135069-20135153)
chr2 (228-280)||(35872850-35872902)
[»] chr6 (21 HSPs)
chr6 (173-285)||(1205936-1206048)
chr6 (185-308)||(18286817-18286940)
chr6 (185-305)||(9237091-9237214)
chr6 (174-263)||(9602081-9602170)
chr6 (175-263)||(31967-32055)
chr6 (208-304)||(9156154-9156250)
chr6 (175-256)||(1205651-1205732)
chr6 (229-314)||(1206222-1206307)
chr6 (173-264)||(130760-130853)
chr6 (173-256)||(9216755-9216838)
chr6 (213-284)||(12308564-12308635)
chr6 (208-270)||(10418425-10418487)
chr6 (188-270)||(12134570-12134652)
chr6 (176-305)||(16509699-16509829)
chr6 (208-270)||(24055196-24055258)
chr6 (209-270)||(1408967-1409028)
chr6 (198-263)||(32215853-32215918)
chr6 (187-270)||(19054427-19054510)
chr6 (221-282)||(5854929-5854990)
chr6 (208-272)||(1744927-1744991)
chr6 (220-272)||(10733523-10733575)


Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 20 - 311
Target Start/End: Complemental strand, 12840908 - 12840618
Alignment:
Q  20 acccgagatacggcatcaagcctatcaaataccgaaaccaaggaatctggtatgggttttctttctccactcacatttagaatatgtctttccaatgtca 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||  |||||||||||||||    
T  12840908 acccgagatacggcatcaagcctatcaaataccgaaaccaaggaatctggtatgggtttcctttttccactcacatttagaat--gtctttccaatgtca 12840811  T
Q  120 gtttttgctctctatccatttctttacgtttgaaattccccactctttgcggtc-gcccctagcctcctaattgcggcatttgggttgtcttcattgcat 218  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  12840810 gtttttgctctctatccatttcttcacgttagaaattccccactctttgcggtccgcccctagcctcctaattgcggcatttgggttgttttcattgcat 12840711  T
Q  219 tctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcctagagatatggtttgtgtagtgtttataaagctttgg 311  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  12840710 tctccaacaccttcgttgtgttgggtttgaaagggtggctttagttccacattgcctagagatatggcttgtgtagtgtttataaagctttgg 12840618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 176 - 314
Target Start/End: Complemental strand, 422842 - 422704
Alignment:
Q  176 ccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcct 275  Q
    |||||||  |||||| ||||||||||||||| || |||||||   |||||||||||||||||||||||| |||| ||||| ||||| | |||||||||||    
T  422842 ccctagcagcctaatcgcggcatttgggttgcctccattgcagcttccaacaccttcattgtgttgggtgtgaaggggtgactttaatcccacattgcct 422743  T
Q  276 agagatatggtttgtgtagtgtttataaagctttggcag 314  Q
    ||||||||||  | || |||| ||||||||||| |||||    
T  422742 agagatatggcctatgcagtgattataaagcttgggcag 422704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 173 - 306
Target Start/End: Original strand, 28359003 - 28359137
Alignment:
Q  173 cgcccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaa-gggtggctttagttccacatt 271  Q
    ||||||||| |  ||||||||||||||||||||  ||||||||||  |||||||||||||||| | |||||| ||||| |||||| || ||| |||||||    
T  28359003 cgcccctagtcatctaattgcggcatttgggtttccttcattgcagcctccaacaccttcattattttgggtgtgaaatgggtggattcagtcccacatt 28359102  T
Q  272 gcctagagatatggtttgtgtagtgtttataaagc 306  Q
    |||||||||||| |  |||||||||||||||||||    
T  28359103 gcctagagatatagcctgtgtagtgtttataaagc 28359137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 175 - 306
Target Start/End: Original strand, 23721065 - 23721196
Alignment:
Q  175 cccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcc 274  Q
    ||||||||| |||||||||||||||||||||| ||||||||||  |||||||| | ||||||||||||  ||||| |||||| |||||| || |||||      
T  23721065 cccctagccacctaattgcggcatttgggttgccttcattgcagcctccaacaacatcattgtgttggacttgaaggggtgggtttagtccctcattgtt 23721164  T
Q  275 tagagatatggtttgtgtagtgtttataaagc 306  Q
    |||| ||||||  | |||||||||||||||||    
T  23721165 tagaaatatggcctatgtagtgtttataaagc 23721196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 166 - 304
Target Start/End: Complemental strand, 39079821 - 39079682
Alignment:
Q  166 ttgcggtc-gcccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagtt 264  Q
    |||||||| ||||||||||  |||||||||||||||| |||||||||||  ||  ||||||||||||||||||||||||| |||| |||||| ||||| |    
T  39079821 ttgcggtctgcccctagccatctaattgcggcatttgagttgtcttcatcacagcctccaacaccttcattgtgttgggtgtgaaggggtggatttagat 39079722  T
Q  265 ccacattgcctagagatatggtttgtgtagtgtttataaa 304  Q
       || |||||||||||||||  |||| ||||||||||||    
T  39079721 aatcaatgcctagagatatggcatgtgcagtgtttataaa 39079682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 174 - 306
Target Start/End: Original strand, 41709939 - 41710071
Alignment:
Q  174 gcccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgc 273  Q
    |||||||| | ||||||||| |||||| ||||||||||||||||  ||||||||||||||||||||||| |||||  |||||| |||||| |||  | ||    
T  41709939 gcccctagtcgcctaattgcagcatttaggttgtcttcattgcaacctccaacaccttcattgtgttggctttgagggggtggatttagtcccatgtcgc 41710038  T
Q  274 ctagagatatggtttgtgtagtgtttataaagc 306  Q
     |||| ||||||  ||| |||||||||||||||    
T  41710039 ttagacatatggcctgtctagtgtttataaagc 41710071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 190 - 314
Target Start/End: Complemental strand, 30610973 - 30610852
Alignment:
Q  190 ttgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcctagagatatggtttg 289  Q
    |||| |||||||||||| ||||||||||  |||||||||||||||||||||||||  ||| |||||| |||| |  ||||||||||||||||||||  |     
T  30610973 ttgcagcatttgggttgccttcattgcagcctccaacaccttcattgtgttgggtgggaaggggtggatttaatctcacattgcctagagatatggcct- 30610875  T
Q  290 tgtagtgtttataaagctttggcag 314  Q
      ||||||||||||||||| |||||    
T  30610874 --tagtgtttataaagcttgggcag 30610852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 185 - 284
Target Start/End: Original strand, 41387462 - 41387561
Alignment:
Q  185 cctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcctagagatatg 284  Q
    |||||||| | ||||||||||| ||||||||||  ||||||||||||||||||||| ||| |||| |||||| |||||| ||||||||||| || |||||    
T  41387462 cctaattgtgacatttgggttgccttcattgcaacctccaacaccttcattgtgttaggtatgaaggggtgggtttagtcccacattgccttgacatatg 41387561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 166 - 308
Target Start/End: Original strand, 41389219 - 41389361
Alignment:
Q  166 ttgcggtc-gcccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagtt 264  Q
    |||||||| |||| |||||  ||||||||||| ||||  ||||||||||||||  |  |||||||||||||||||| ||| |||| |||||| ||||||     
T  41389219 ttgcggtctgcccgtagccgactaattgcggcctttga-ttgtcttcattgcagccatcaacaccttcattgtgttaggtgtgaaggggtggatttagtc 41389317  T
Q  265 ccacattgcctagagatatggtttgtgtagtgtttataaagctt 308  Q
    ||||||||| ||||||||| |  |||||||| ||||||||||||    
T  41389318 ccacattgcttagagatatagcctgtgtagtatttataaagctt 41389361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 185 - 295
Target Start/End: Complemental strand, 12305228 - 12305118
Alignment:
Q  185 cctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcctagagatatg 284  Q
    ||||||||||||||||||| || |||  |||||  || |||||||||||||||||||||||| ||||| ||| |||||| ||| ||||| ||||||||||    
T  12305228 cctaattgcggcatttgggctgacttatttgcagccttcaacaccttcattgtgttgggtttaaaaggatggatttagtcccatattgcttagagatatg 12305129  T
Q  285 gtttgtgtagt 295  Q
    | | |||||||    
T  12305128 gctggtgtagt 12305118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 173 - 314
Target Start/End: Complemental strand, 16015593 - 16015452
Alignment:
Q  173 cgcccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattg 272  Q
    ||||||||||| ||||||||||| ||| ||  || ||||||| |   |||||| | |||||||||||||  | |||| |||||| |||||| |||| |||    
T  16015593 cgcccctagccacctaattgcggaattaggaatgccttcatttccacctccaaaatcttcattgtgttgactgtgaaggggtggatttagtcccacgttg 16015494  T
Q  273 cctagagatatggtttgtgtagtgtttataaagctttggcag 314  Q
    |||||||||||||  |||||||||||||||||| || |||||    
T  16015493 cctagagatatggcatgtgtagtgtttataaagtttgggcag 16015452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 186 - 314
Target Start/End: Complemental strand, 16015891 - 16015763
Alignment:
Q  186 ctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcctagagatatgg 285  Q
    ||||||||||||||||||||  ||||||||||  ||||||||  ||||| ||||| ||| |||| |||  | |||| | |||||||||||||||||||||    
T  16015891 ctaattgcggcatttgggttaccttcattgcagcctccaacattttcatcgtgttcggtgtgaatgggcagatttattcccacattgcctagagatatgg 16015792  T
Q  286 tttgtgtagtgtttataaagctttggcag 314  Q
     ||  |||||||||| ||||||| |||||    
T  16015791 ctttcgtagtgtttagaaagcttgggcag 16015763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 185 - 304
Target Start/End: Complemental strand, 39080113 - 39079994
Alignment:
Q  185 cctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcctagagatatg 284  Q
    |||||||||||||||||||||| |||| || ||  |||||||||| ||||||| | |||| || | |||||| |||| |  |||||||||||||||||||    
T  39080113 cctaattgcggcatttgggttgccttcgttccagcctccaacaccctcattgtatcgggtgtggaggggtggatttaatctcacattgcctagagatatg 39080014  T
Q  285 gtttgtgtagtgtttataaa 304  Q
       |||||||||||||||||    
T  39080013 acatgtgtagtgtttataaa 39079994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 175 - 295
Target Start/End: Original strand, 3973082 - 3973202
Alignment:
Q  175 cccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcc 274  Q
    ||||||||| |||||||||  ||||||||||| ||||||||||  || |||||||||||| |||||||||||||  |||||| |||  | ||||  |||     
T  3973082 cccctagccgcctaattgcaacatttgggttgccttcattgcagccttcaacaccttcatcgtgttgggtttgagggggtggattttttcccacggtgct 3973181  T
Q  275 tagagatatggtttgtgtagt 295  Q
    | |||||||||| ||||||||    
T  3973182 tggagatatggtgtgtgtagt 3973202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 178 - 308
Target Start/End: Original strand, 46870238 - 46870369
Alignment:
Q  178 ctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaaggg-tggctttagttccacattgccta 276  Q
    |||||| | ||||| ||||||||||| || | || |||||  ||||||||| |||||||| | |||| |||| ||| ||| |||||| ||||||||||||    
T  46870238 ctagccgcataattacggcatttgggctgccatctttgcagcctccaacactttcattgtttagggtgtgaagggggtggatttagtcccacattgccta 46870337  T
Q  277 gagatatggtttgtgtagtgtttataaagctt 308  Q
    | |||||||  |||||||| ||||||||||||    
T  46870338 gggatatggcatgtgtagtatttataaagctt 46870369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 176 - 314
Target Start/End: Complemental strand, 14596373 - 14596235
Alignment:
Q  176 ccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcct 275  Q
    ||||||||  ||||||||||||||||||||  |||||||||   ||||||||  ||||| ||||| ||| |||| |||  | |||| | |||||||||||    
T  14596373 ccctagccgtctaattgcggcatttgggttaccttcattgctgcctccaacattttcatcgtgttcggtgtgaatgggcagatttattcccacattgcct 14596274  T
Q  276 agagatatggtttgtgtagtgtttataaagctttggcag 314  Q
    ||||||| || ||  |||||||||| ||||||| |||||    
T  14596273 agagataaggctttcgtagtgtttagaaagcttgggcag 14596235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 208 - 314
Target Start/End: Original strand, 32000772 - 32000878
Alignment:
Q  208 cttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcctagagatatggtttgtgtagtgtttataaagct 307  Q
    ||||||||||  || |||||||||||| ||||||| |||||  || ||| |||||| ||||| ||| ||||||||||   ||||||||||||||||||||    
T  32000772 cttcattgcagccttcaacaccttcatggtgttggctttgaggggatggatttagtcccacaatgcttagagatatgtcctgtgtagtgtttataaagct 32000871  T
Q  308 ttggcag 314  Q
    | |||||    
T  32000872 tgggcag 32000878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 185 - 283
Target Start/End: Original strand, 46753059 - 46753157
Alignment:
Q  185 cctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcctagagatat 283  Q
    ||||||||| |||||||||||| |||||| |||  ||||||||  ||| ||||||||||| |||| |||| | |||||| | |||||||||||||||||    
T  46753059 cctaattgctgcatttgggttgccttcatcgcagcctccaacatgttccttgtgttgggtgtgaaggggtagatttagtccaacattgcctagagatat 46753157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 173 - 314
Target Start/End: Complemental strand, 14596065 - 14595924
Alignment:
Q  173 cgcccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattg 272  Q
    |||||| |||| ||||||||||| ||| ||  || ||||||| |   |||||| | |||||||||||||  | |||| |||||| |||||  |||| |||    
T  14596065 cgcccccagccacctaattgcggaattaggaatgccttcatttccacctccaaaatcttcattgtgttgactgtgaaggggtggatttagccccacgttg 14595966  T
Q  273 cctagagatatggtttgtgtagtgtttataaagctttggcag 314  Q
    |||||||||||||  |||||||||||||||||| || |||||    
T  14595965 cctagagatatggcatgtgtagtgtttataaagtttgggcag 14595924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 314
Target Start/End: Complemental strand, 25589254 - 25589114
Alignment:
Q  173 cgcccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattg 272  Q
    ||||||||||  |||| | || |||||||||||| ||||| | ||  |||||||| | ||| |||||||||| |||| |||||  |||||| ||||||||    
T  25589254 cgcccctagctgcctattagcagcatttgggttgccttcacttcagcctccaacatcctcactgtgttgggtgtgaaggggtgaatttagt-ccacattg 25589156  T
Q  273 cctagagatatggtttgtgtagtgtttataaagctttggcag 314  Q
    | | || ||||||  ||||||||||||||||| ||| |||||    
T  25589155 cttggatatatggcatgtgtagtgtttataaaacttgggcag 25589114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 187 - 270
Target Start/End: Complemental strand, 1663774 - 1663692
Alignment:
Q  187 taattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    |||||||||| ||||| | | ||||||||||  ||||||||||||||||||||||| |||| | |||||| |||||| ||||||    
T  1663774 taattgcggcctttggttagccttcattgcagcctccaacaccttcattgtgttggctttg-aggggtggatttagtcccacat 1663692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 270
Target Start/End: Complemental strand, 257416 - 257354
Alignment:
Q  208 cttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    ||||||||||  ||||||||||||||||||||||| |||||  |||||| |||||| ||||||    
T  257416 cttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 257354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 306
Target Start/End: Complemental strand, 10406735 - 10406637
Alignment:
Q  208 cttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcctagagatatggtttgtgtagtgtttataaagc 306  Q
    ||||||||||  ||||||||| |||| |||||||| |||||   ||||| ||||||  |||||  | |||||||||||  |||||||||||||||||||    
T  10406735 cttcattgcagcctccaacactttcactgtgttggctttgaggcggtgggtttagtctcacatctcttagagatatggcctgtgtagtgtttataaagc 10406637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 270
Target Start/End: Original strand, 28909967 - 28910049
Alignment:
Q  188 aattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    ||||||| | ||||| |||  |||||||||  ||||||||||||||||||||||| |||||  |||||| |||||| ||||||    
T  28909967 aattgcgccctttggtttgctttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 28910049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 285
Target Start/End: Complemental strand, 14092319 - 14092255
Alignment:
Q  221 tccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcctagagatatgg 285  Q
    |||| ||||||||||||| ||| | |||  |||||| |||||| |||||||||||||||||||||    
T  14092319 tccatcaccttcattgtgctggatgtgagggggtgggtttagtcccacattgcctagagatatgg 14092255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 285
Target Start/End: Complemental strand, 14402337 - 14402273
Alignment:
Q  221 tccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcctagagatatgg 285  Q
    |||| ||||||||||||| ||| | |||  |||||| |||||| |||||||||||||||||||||    
T  14402337 tccatcaccttcattgtgctggatgtgagggggtgggtttagtcccacattgcctagagatatgg 14402273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 173 - 244
Target Start/End: Complemental strand, 30899164 - 30899093
Alignment:
Q  173 cgcccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggt 244  Q
    |||| |||||| |||||| | ||||||||||||| ||||||||||  ||  |||||||||| ||||||||||    
T  30899164 cgcctctagccacctaatggtggcatttgggttgccttcattgcagcctttaacaccttcagtgtgttgggt 30899093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 208 - 263
Target Start/End: Complemental strand, 43168042 - 43167987
Alignment:
Q  208 cttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagt 263  Q
    ||||||||||  ||||||||||||||||||||||| |||||  |||||| ||||||    
T  43168042 cttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagt 43167987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 270
Target Start/End: Complemental strand, 1661340 - 1661278
Alignment:
Q  208 cttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    ||||||||||  ||||||||||||||||| ||||| |||||  |||||| |||||| ||||||    
T  1661340 cttcattgcagcctccaacaccttcattgcgttggctttgacggggtggatttagtcccacat 1661278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 270
Target Start/End: Complemental strand, 40121755 - 40121705
Alignment:
Q  220 ctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    |||||||||||| |||||||||| |||||  |||||| |||||||||||||    
T  40121755 ctccaacacctttattgtgttggctttgagggggtggatttagttccacat 40121705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 270
Target Start/End: Original strand, 41670823 - 41670885
Alignment:
Q  208 cttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    ||||||||||  |||||||||| |||||||||||| |||||  |||||| |||||| ||||||    
T  41670823 cttcattgcagcctccaacaccctcattgtgttggctttgagggggtggatttagtcccacat 41670885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 263
Target Start/End: Complemental strand, 10193543 - 10193470
Alignment:
Q  190 ttgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagt 263  Q
    ||||||||||||||||| ||| ||||||  ||||||| |||| ||||||||| || |||  |||||| ||||||    
T  10193543 ttgcggcatttgggttgccttaattgcagcctccaactcctttattgtgttgtgtgtgagggggtgggtttagt 10193470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 244
Target Start/End: Complemental strand, 14092050 - 14092014
Alignment:
Q  208 cttcattgcattctccaacaccttcattgtgttgggt 244  Q
    ||||||||||  |||||||||||||||||||||||||    
T  14092050 cttcattgcagcctccaacaccttcattgtgttgggt 14092014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 244
Target Start/End: Complemental strand, 14402068 - 14402032
Alignment:
Q  208 cttcattgcattctccaacaccttcattgtgttgggt 244  Q
    ||||||||||  |||||||||||||||||||||||||    
T  14402068 cttcattgcagcctccaacaccttcattgtgttgggt 14402032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 304
Target Start/End: Complemental strand, 21033960 - 21033884
Alignment:
Q  228 ccttcattgtgttgggtttgaaagggtggctttagttccacattgcctagagatatggtttgtgtagtgtttataaa 304  Q
    |||||||| ||||| || |||| |||||  ||||||  ||||||||||||||||||||  | ||| |||||||||||    
T  21033960 ccttcattatgttgtgtgtgaaggggtgaatttagtctcacattgcctagagatatggcatttgtggtgtttataaa 21033884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 248
Target Start/End: Original strand, 41670539 - 41670579
Alignment:
Q  208 cttcattgcattctccaacaccttcattgtgttgggtttga 248  Q
    ||||||||||| ||||||||||||| ||||||||| |||||    
T  41670539 cttcattgcatcctccaacaccttcgttgtgttggctttga 41670579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 173 - 306
Target Start/End: Original strand, 4796278 - 4796411
Alignment:
Q  173 cgcccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattg 272  Q
    ||||||||||| | ||||||| |||||||||||| ||||||||||  ||||||||||||||||||||||||| |||| |||||| ||||||  |||||||    
T  4796278 cgcccctagccgcataattgcagcatttgggttgccttcattgcagcctccaacaccttcattgtgttgggtgtgaaggggtggatttagtcacacattg 4796377  T
Q  273 cctagagatatggtttgtgtagtgtttataaagc 306  Q
    | |||||||||||  |||||||||||||||||||    
T  4796378 cttagagatatggcatgtgtagtgtttataaagc 4796411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 173 - 314
Target Start/End: Complemental strand, 31973618 - 31973477
Alignment:
Q  173 cgcccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattg 272  Q
    ||||||||||| |||||||| |||||||| |||| ||| ||||||  ||||||||||||||||||||||||| ||||||||||| |||||| ||||||||    
T  31973618 cgcccctagccgcctaattgaggcatttgagttgcctttattgcagcctccaacaccttcattgtgttgggtgtgaaagggtggatttagtcccacattg 31973519  T
Q  273 cctagagatatggtttgtgtagtgtttataaagctttggcag 314  Q
     ||||||||||||  | |||||||||||||||| || |||||    
T  31973518 tctagagatatggcctatgtagtgtttataaagtttgggcag 31973477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 175 - 314
Target Start/End: Original strand, 16275164 - 16275302
Alignment:
Q  175 cccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcc 274  Q
    ||||||||| ||| |||||||||||||||||| ||||||||||  ||||   |||||||||||||||| | | || |||||| |||||| ||||||||||    
T  16275164 cccctagccacctgattgcggcatttgggttgccttcattgcagcctccgt-accttcattgtgttggatgtcaaggggtggatttagtcccacattgcc 16275262  T
Q  275 tagagatatggtttgtgtagtgtttataaagctttggcag 314  Q
    |||||||||||  |||||||||| | ||||| || |||||    
T  16275263 tagagatatggcctgtgtagtgtgtgtaaagtttgggcag 16275302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 173 - 272
Target Start/End: Complemental strand, 31973309 - 31973210
Alignment:
Q  173 cgcccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattg 272  Q
    |||||| |||| |||||||||||||||||||||  |||||||| | |||||||||||||| |||||||||||||||| |||||| |||||| || |||||    
T  31973309 cgcccccagccgcctaattgcggcatttgggtttccttcattgaaatctccaacaccttcgttgtgttgggtttgaaggggtggatttagtccctcattg 31973210  T

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Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 187 - 284
Target Start/End: Complemental strand, 15844394 - 15844297
Alignment:
Q  187 taattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcctagagatatg 284  Q
    |||||||||||||||||||  |||| |||||  || ||||||||||||||||||| || |||| |||||| |||||| ||||||| ||||||||||||    
T  15844394 taattgcggcatttgggttaccttcgttgcaacctacaacaccttcattgtgttgagtgtgaaggggtggatttagtcccacatttcctagagatatg 15844297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 178 - 277
Target Start/End: Original strand, 28362467 - 28362566
Alignment:
Q  178 ctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcctag 277  Q
    |||||||||||||||| |||||||| ||| |||||||||| ||||||  |||||  |||| |||||| ||| ||||||| ||||||| || |||||||||    
T  28362467 ctagcctcctaattgcagcatttggtttgccttcattgcaatctccagtaccttagttgtattgggtgtgagagggtggatttagtttcatattgcctag 28362566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 223 - 306
Target Start/End: Complemental strand, 30587920 - 30587837
Alignment:
Q  223 caacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcctagagatatggtttgtgtagtgtttataaagc 306  Q
    ||||||||||| ||||||||| || ||||||||| |||||| |||||||||  ||||||||||  |||||||||| ||||||||    
T  30587920 caacaccttcaatgtgttgggcttaaaagggtggatttagtcccacattgctcagagatatggcatgtgtagtgtgtataaagc 30587837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 188 - 270
Target Start/End: Complemental strand, 873865 - 873783
Alignment:
Q  188 aattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    ||||||||| ||||| ||| ||||||||||   |||||||||||||||||||||| |||||  |||||| |||||| ||||||    
T  873865 aattgcggcctttggtttgccttcattgcagcttccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 873783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 188 - 242
Target Start/End: Complemental strand, 17435407 - 17435353
Alignment:
Q  188 aattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgg 242  Q
    ||||| ||||||||| ||||||||||||||  |||||||||||||||||||||||    
T  17435407 aattgaggcatttggtttgtcttcattgcaacctccaacaccttcattgtgttgg 17435353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 188 - 270
Target Start/End: Complemental strand, 28010285 - 28010203
Alignment:
Q  188 aattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    ||||||||| ||||| ||| ||||||||||  || |||||||||||||||||||| |||||  |||||| |||||| ||||||    
T  28010285 aattgcggcctttggcttgccttcattgcagccttcaacaccttcattgtgttggctttgagggggtggatttagtcccacat 28010203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 304
Target Start/End: Complemental strand, 904907 - 904806
Alignment:
Q  203 gttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcctagagatatggtttgtgtagtgtttata 302  Q
    |||| ||||||||||  || |||  ||||||||||||||  |||||| |||||| |||||| |||||||||  | | |||||| ||||||||||||||||    
T  904907 gttgccttcattgcagccttcaagcccttcattgtgttgcctttgaaggggtggatttagtcccacattgctaacatatatggcttgtgtagtgtttata 904808  T
Q  303 aa 304  Q
    ||    
T  904807 aa 904806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 187 - 242
Target Start/End: Complemental strand, 20319110 - 20319056
Alignment:
Q  187 taattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgg 242  Q
    |||||||||||||||||||| || |||||||| ||||||||||||||| |||||||    
T  20319110 taattgcggcatttgggttg-ctgcattgcatcctccaacaccttcatggtgttgg 20319056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 270
Target Start/End: Original strand, 27760346 - 27760408
Alignment:
Q  208 cttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    ||||||||||  ||||||||||||||||||||||| |||||  |||||| |||||| ||||||    
T  27760346 cttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 27760408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 270
Target Start/End: Complemental strand, 37995803 - 37995721
Alignment:
Q  188 aattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    ||||||||| ||||| ||| ||||||| ||   |||||||||||||||||||||| |||||  |||||| |||||| ||||||    
T  37995803 aattgcggcctttggtttgccttcattccagcttccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 37995721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 196 - 269
Target Start/End: Original strand, 24918107 - 24918180
Alignment:
Q  196 catttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccaca 269  Q
    ||||||| ||| ||||||||||   |||||||||||||||||||||| |||||  |||||| |||||| |||||    
T  24918107 catttggtttgccttcattgcaacttccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 24918180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 188 - 269
Target Start/End: Original strand, 24994007 - 24994088
Alignment:
Q  188 aattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccaca 269  Q
    ||||||| ||||||| ||  ||||||||||   |||||||||||||||||||||| |||||  |||||| |||||| |||||    
T  24994007 aattgcgacatttggtttaccttcattgcaacttccaacaccttcattgtgttggctttgagggggtggatttagtcccaca 24994088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 211 - 270
Target Start/End: Complemental strand, 1028239 - 1028180
Alignment:
Q  211 cattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    |||||||  ||||||||||||||||||||||| |||||  |||||| |||||| ||||||    
T  1028239 cattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 1028180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 270
Target Start/End: Original strand, 13843664 - 13843714
Alignment:
Q  220 ctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    ||||||||||||||||||||||| |||||  |||||| |||||| ||||||    
T  13843664 ctccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 13843714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 270
Target Start/End: Original strand, 13843980 - 13844030
Alignment:
Q  220 ctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    ||||||||||||||||||||||| |||||  |||||| |||||| ||||||    
T  13843980 ctccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 13844030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 270
Target Start/End: Complemental strand, 17016230 - 17016180
Alignment:
Q  220 ctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    ||||||||||||||||||||||| |||||  |||||| |||||| ||||||    
T  17016230 ctccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 17016180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 270
Target Start/End: Original strand, 27760030 - 27760092
Alignment:
Q  208 cttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    ||||||||||  ||||||||| ||||||||||||| |||||  |||||| |||||| ||||||    
T  27760030 cttcattgcagcctccaacactttcattgtgttggctttgagggggtggatttagtcccacat 27760092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 306
Target Start/End: Original strand, 33105529 - 33105631
Alignment:
Q  204 ttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcctagagatatggtttgtgtagtgtttataa 303  Q
    ||||||||||| ||  || |||||| ||||||||||||  ||||||||| ||  || ||| ||||||||  ||||||||| || ||| |||| |||||||    
T  33105529 ttgtcttcattccaaccttcaacactttcattgtgttgaatttgaaaggatgtattcagtcccacattgaatagagatatagtatgtctagtatttataa 33105628  T
Q  304 agc 306  Q
    |||    
T  33105629 agc 33105631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 268
Target Start/End: Original strand, 20811421 - 20811469
Alignment:
Q  220 ctccaacaccttcattgtgttgggtttgaaagggtggctttagttccac 268  Q
    ||||||||||||||||||||||| |||||  |||||| |||||| ||||    
T  20811421 ctccaacaccttcattgtgttggctttgagggggtggatttagtcccac 20811469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 313
Target Start/End: Complemental strand, 38604003 - 38603955
Alignment:
Q  265 ccacattgcctagagatatggtttgtgtagtgtttataaagctttggca 313  Q
    ||||||||| || ||||||||  ||||||||||||||||||||| ||||    
T  38604003 ccacattgcttaaagatatggcatgtgtagtgtttataaagcttgggca 38603955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 175 - 308
Target Start/End: Original strand, 38887023 - 38887156
Alignment:
Q  175 cccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcc 274  Q
    ||||||||| |||||||||||||||||||||| |||| |||||  ||||||||||||||||||||||||| |||| |||| | |||| | ||||||||||    
T  38887023 cccctagccgcctaattgcggcatttgggttgccttcgttgcagcctccaacaccttcattgtgttgggtgtgaaggggttgatttaatcccacattgcc 38887122  T
Q  275 tagagatatggtttgtgtagtgtttataaagctt 308  Q
    ||||||||||   | ||||||| |||||||||||    
T  38887123 tagagatatgacctatgtagtgcttataaagctt 38887156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 195 - 314
Target Start/End: Original strand, 30590390 - 30590509
Alignment:
Q  195 gcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcctagagatatggtttgtgtag 294  Q
    |||||||||||| ||||||||||  ||||||||||||||||||||| ||| |||| |||||| |||||| ||||||||| |||| ||||||  |||||||    
T  30590390 gcatttgggttgccttcattgcagcctccaacaccttcattgtgtttggtgtgaaggggtggatttagtcccacattgcatagatatatggcatgtgtag 30590489  T
Q  295 tgtttataaagctttggcag 314  Q
    |||||||||||||| |||||    
T  30590490 tgtttataaagcttgggcag 30590509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 173 - 306
Target Start/End: Original strand, 39590619 - 39590750
Alignment:
Q  173 cgcccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattg 272  Q
    ||||||||||| |||||||||||||||||||| | |||||||||| |||||||||||||||||||||| ||| |||| |||||| | |||| |  |||||    
T  39590619 cgcccctagccgcctaattgcggcatttgggt-gccttcattgcagtctccaacaccttcattgtgtt-ggtgtgaaggggtggatatagtccagcattg 39590716  T
Q  273 cctagagatatggtttgtgtagtgtttataaagc 306  Q
    | |||||||||||  ||| |||||||||||||||    
T  39590717 cttagagatatggcctgtctagtgtttataaagc 39590750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 197 - 304
Target Start/End: Original strand, 26642531 - 26642638
Alignment:
Q  197 atttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcctagagatatggtttgtgtagtg 296  Q
    |||||||||  |||||||||| |||| |||||||||||||||||| || |||  |||||| |||||||||||||||||||||||||||   |||||||||    
T  26642531 atttgggtttccttcattgcagtctcaaacaccttcattgtgttgagtgtgattgggtggatttagttccacattgcctagagatatgacatgtgtagtg 26642630  T
Q  297 tttataaa 304  Q
    ||||||||    
T  26642631 tttataaa 26642638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 175 - 313
Target Start/End: Original strand, 34529909 - 34530047
Alignment:
Q  175 cccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcc 274  Q
    ||||| ||| |||||||||||||||||||||| |||||||  |  |||| | |||||||||||||||||| | || ||| || |||||| ||||||||      
T  34529909 cccctggccgcctaattgcggcatttgggttgccttcatttaagcctcctataccttcattgtgttgggtgtaaaggggcggatttagtcccacattgat 34530008  T
Q  275 tagagatatggtttgtgtagtgtttataaagctttggca 313  Q
    ||||| |||||| ||||||||||||||||||||| ||||    
T  34530009 tagaggtatggtctgtgtagtgtttataaagcttgggca 34530047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 185 - 304
Target Start/End: Original strand, 26639043 - 26639162
Alignment:
Q  185 cctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcctagagatatg 284  Q
    |||||||||| ||||||||||  |||||||||| || |||||||||||||||||||| || |||  |||||| |||||| ||||||||||| |||||| |    
T  26639043 cctaattgcgacatttgggtttccttcattgcagtccccaacaccttcattgtgttgagtgtgagggggtggatttagtcccacattgccttgagatacg 26639142  T
Q  285 gtttgtgtagtgtttataaa 304  Q
       |||||||||||||||||    
T  26639143 acatgtgtagtgtttataaa 26639162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 175 - 283
Target Start/End: Complemental strand, 28488514 - 28488406
Alignment:
Q  175 cccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcc 274  Q
    |||||| || |||||||| |||||||| |||| ||||||||||  ||  |||||||||||||||||||||||||| |||||| |||||| ||| |||||     
T  28488514 cccctaaccgcctaattgtggcatttgagttgccttcattgcagccttaaacaccttcattgtgttgggtttgaaggggtggatttagtcccatattgct 28488415  T
Q  275 tagagatat 283  Q
    || ||||||    
T  28488414 tatagatat 28488406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 188 - 284
Target Start/End: Complemental strand, 44933250 - 44933154
Alignment:
Q  188 aattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcctagagatatg 284  Q
    |||||| || ||||||||| ||||||||||  |||||||||||||||||||||||||||||| |||||| ||||||  |||||  | ||||||||||    
T  44933250 aattgcagcctttgggttgccttcattgcaccctccaacaccttcattgtgttgggtttgaaggggtggatttagtctcacatcacttagagatatg 44933154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 175 - 284
Target Start/End: Original strand, 25971348 - 25971457
Alignment:
Q  175 cccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcc 274  Q
    ||||||||| |||||||| | ||||| ||| | ||||||||||   |||||||||||||||||| ||||| |||| |||||| || |||  |||||||||    
T  25971348 cccctagccgcctaattgtgacattttggtagccttcattgcagcatccaacaccttcattgtgctgggtgtgaaggggtggattcagtcacacattgcc 25971447  T
Q  275 tagagatatg 284  Q
     |||||||||    
T  25971448 aagagatatg 25971457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 188 - 270
Target Start/End: Complemental strand, 23027674 - 23027592
Alignment:
Q  188 aattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    |||||| |||||||| ||| ||||||||||  ||| ||||||||||||||||||| |||||  |||||| |||||| ||||||    
T  23027674 aattgcagcatttggcttgccttcattgcagcctcaaacaccttcattgtgttggctttgagggggtggatttagtcccacat 23027592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 188 - 270
Target Start/End: Complemental strand, 23027997 - 23027915
Alignment:
Q  188 aattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    ||||||||| ||||| ||| ||||||||||  || |||||||||||||||||||| |||||  |||||| |||||| ||||||    
T  23027997 aattgcggcctttggcttgccttcattgcagccttcaacaccttcattgtgttggctttgagggggtggatttagtcccacat 23027915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 188 - 270
Target Start/End: Original strand, 31766936 - 31767018
Alignment:
Q  188 aattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    ||||||||| ||||| ||| ||||||||||  ||||||| ||||||||||||||| |||||  |||||| |||||| ||||||    
T  31766936 aattgcggcctttggtttgccttcattgcagcctccaaccccttcattgtgttggctttgagggggtggatttagtcccacat 31767018  T

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Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 248
Target Start/End: Complemental strand, 3184072 - 3184012
Alignment:
Q  188 aattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttga 248  Q
    ||||||||| ||||| ||| ||||||||||  ||||||||||||||||||||||| |||||    
T  3184072 aattgcggcctttggtttgccttcattgcagcctccaacaccttcattgtgttggctttga 3184012  T

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Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 208 - 271
Target Start/End: Complemental strand, 20298665 - 20298602
Alignment:
Q  208 cttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacatt 271  Q
    ||||||||||  ||||||||||||||||||||||| |||||  |||||| |||||| |||||||    
T  20298665 cttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccacatt 20298602  T

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Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 270
Target Start/End: Complemental strand, 21085297 - 21085235
Alignment:
Q  208 cttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    ||||||||||  ||||||||||||||||||||||| |||||  |||||| |||||| ||||||    
T  21085297 cttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 21085235  T

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Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 285
Target Start/End: Original strand, 15157002 - 15157114
Alignment:
Q  173 cgcccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattg 272  Q
    |||| ||||||  |||||||||| |||||||||  ||| ||||||  |||||   | ||| ||||||||||| ||||||||||| |||||| ||||||||    
T  15157002 cgcctctagccgtctaattgcggaatttgggttcccttaattgcagcctccattgcgttcgttgtgttgggtgtgaaagggtggatttagtcccacattg 15157101  T
Q  273 cctagagatatgg 285  Q
      || ||||||||    
T  15157102 aatatagatatgg 15157114  T

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Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 228 - 303
Target Start/End: Complemental strand, 16213265 - 16213190
Alignment:
Q  228 ccttcattgtgttgggtttgaaagggtggctttagttccacattgcctagagatatggtttgtgtagtgtttataa 303  Q
    ||||||||||||||| | |||| |||||| ||||||  |||| |||||||||||||||  | ||||||| ||||||    
T  16213265 ccttcattgtgttggatgtgaaggggtggatttagtctcacactgcctagagatatggcctatgtagtgattataa 16213190  T

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Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 304
Target Start/End: Original strand, 30602874 - 30602948
Alignment:
Q  228 ccttcattgtgttgggtttgaaagggtggctttagttccacattgcctagagatatggtttgtgtagtgtttataaa 304  Q
    |||||| ||| |||||||||||  ||||| |||||  ||||||||| ||||||| |||  |||||||||||||||||    
T  30602874 ccttcactgtattgggtttgaa--ggtggatttagacccacattgcttagagatgtggcatgtgtagtgtttataaa 30602948  T

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Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 272
Target Start/End: Original strand, 36997133 - 36997185
Alignment:
Q  220 ctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattg 272  Q
    ||||||||||||||||||||||| |||||  ||||||  ||||| ||||||||    
T  36997133 ctccaacaccttcattgtgttggctttgagggggtggaattagtcccacattg 36997185  T

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Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 248
Target Start/End: Original strand, 40754399 - 40754439
Alignment:
Q  208 cttcattgcattctccaacaccttcattgtgttgggtttga 248  Q
    ||||||||||  ||||||||||||||||||||||| |||||    
T  40754399 cttcattgcagcctccaacaccttcattgtgttggctttga 40754439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 177 - 308
Target Start/End: Complemental strand, 41590407 - 41590278
Alignment:
Q  177 cctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgccta 276  Q
    ||||||| ||||||||||| ||| |||||| ||||||||||  |||||||||||||||||||| |||| |||| |||||| |||||||||||||| ||||    
T  41590407 cctagccgcctaattgcggaatt-gggttgccttcattgcagcctccaacaccttcattgtgtcgggtgtgaaggggtgggtttagttccacatttccta 41590309  T
Q  277 gagatatggtttgtgtagtgtttataaagctt 308  Q
    || ||||||| ||||||||| |||||||||||    
T  41590308 gaaatatggtctgtgtagtg-ttataaagctt 41590278  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 173 - 314
Target Start/End: Complemental strand, 34626958 - 34626817
Alignment:
Q  173 cgcccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattg 272  Q
    ||||||||||| ||||||||| |||| | ||||| ||||||||||  |||||||||||||||| |||||||| |||| | |||| ||||||  ||||||     
T  34626958 cgcccctagccacctaattgcagcatcttggttgccttcattgcagcctccaacaccttcattctgttgggtgtgaaggagtggatttagtctcacattt 34626859  T
Q  273 cctagagatatggtttgtgtagtgtttataaagctttggcag 314  Q
    || ||||||||||  ||||||||||||||||||||| |||||    
T  34626858 cccagagatatggcatgtgtagtgtttataaagcttgggcag 34626817  T

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Target: chr1; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 173 - 308
Target Start/End: Original strand, 18998631 - 18998766
Alignment:
Q  173 cgcccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattg 272  Q
    |||||||||||  | |||||||| ||||||||| |||||||||||  | |||||||||||  |||||||||| ||||||||||| |||||| ||||||||    
T  18998631 cgcccctagccgtcaaattgcggaatttgggttttcttcattgcagccaccaacaccttcgatgtgttgggtgtgaaagggtggatttagtcccacattg 18998730  T
Q  273 cctagagatatggtttgtgtagtgtttataaagctt 308  Q
    ||||||||||||   | |||||||| ||||||||||    
T  18998731 cctagagatatgacctatgtagtgtatataaagctt 18998766  T

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Target: chr1; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 175 - 313
Target Start/End: Complemental strand, 19810879 - 19810742
Alignment:
Q  175 cccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcc 274  Q
    ||||||||  |||||||||||||||||||||| ||||||||||  ||| ||||||||||||||||| ||| |||| |||| ||  |||| ||||||||||    
T  19810879 cccctagctgcctaattgcggcatttgggttggcttcattgcaacctcgaacaccttcattgtgttaggtgtgaaggggt-gcactagtcccacattgcc 19810781  T
Q  275 tagagatatggtttgtgtagtgtttataaagctttggca 313  Q
    |||||||||||  |||| | |||||||||||||| ||||    
T  19810780 tagagatatggcctgtgcaatgtttataaagcttgggca 19810742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 166 - 306
Target Start/End: Complemental strand, 7908036 - 7907895
Alignment:
Q  166 ttgcggtcgcccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaa-gggtggctttagtt 264  Q
    |||| ||| ||||||||| |||||||| ||||||||||||| ||||||||||| ||||  ||  ||||||||||||||| ||||| |||||| ||||||     
T  7908036 ttgcagtcccccctagccgcctaattgtggcatttgggttgccttcattgcatcctccggcagtttcattgtgttgggtgtgaaaggggtggatttagtc 7907937  T
Q  265 ccacattgcctagagatatggtttgtgtagtgtttataaagc 306  Q
    ||||||| |  ||||||||||  |||||||||||||||||||    
T  7907936 ccacatttctcagagatatggcatgtgtagtgtttataaagc 7907895  T

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Target: chr1; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 175 - 302
Target Start/End: Original strand, 51515636 - 51515764
Alignment:
Q  175 cccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaa-gggtggctttagttccacattgc 273  Q
    ||||||||| |||||||| ||||||||| ||| |||||||||   ||||||||||||||||||||||||| ||||| |||||| |||||| | ||||| |    
T  51515636 cccctagccgcctaattgtggcatttggattgccttcattgctgcctccaacaccttcattgtgttgggtgtgaaaggggtggatttagtccgacattac 51515735  T
Q  274 ctagagatatggtttgtgtagtgtttata 302  Q
    |||||||||||   |||||||||||||||    
T  51515736 ctagagatatgccatgtgtagtgtttata 51515764  T

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Target: chr1; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 174 - 313
Target Start/End: Complemental strand, 19811194 - 19811055
Alignment:
Q  174 gcccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgc 273  Q
    |||||||||| |||||||| ||||||||||||| ||||||||||  ||||||| ||||| ||||||||||| ||||   |||| |||||| |||| ||||    
T  19811194 gcccctagccgcctaattgtggcatttgggttgccttcattgcagcctccaactccttcgttgtgttgggtgtgaagatgtggatttagtcccacgttgc 19811095  T
Q  274 ctagagatatggtttgtgtagtgtttataaagctttggca 313  Q
    ||||||||||||  ||| |||||||| || ||||| ||||    
T  19811094 ctagagatatggcctgtttagtgtttttatagcttgggca 19811055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 185 - 302
Target Start/End: Original strand, 6868065 - 6868182
Alignment:
Q  185 cctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcctagagatatg 284  Q
    ||||||||| |||||||||||| | ||| ||||  |||||||||||||||| ||||||||||||| |||||| |||||| ||||||| | ||||||||||    
T  6868065 cctaattgcagcatttgggttgccctcactgcagcctccaacaccttcattttgttgggtttgaaggggtggatttagtcccacattacttagagatatg 6868164  T
Q  285 gtttgtgtagtgtttata 302  Q
    |  |||| ||||||||||    
T  6868165 gcctgtgcagtgtttata 6868182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 173 - 313
Target Start/End: Complemental strand, 33248514 - 33248369
Alignment:
Q  173 cgcccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattg 272  Q
    ||||||||||  ||||||||||||||| ||||||  || |||||| |||||||||||||||||||||||||| | || |||||| ||||||  |||||||    
T  33248514 cgcccctagctgcctaattgcggcattcgggttgcattaattgcaatctccaacaccttcattgtgttgggtgttaacgggtggatttagtctcacattg 33248415  T
Q  273 cctaga-----gatatggtttgtgtagtgtttataaagctttggca 313  Q
    ||||||      ||||||| ||||||||||||||| || |||||||    
T  33248414 cctagacatgtcatatggtctgtgtagtgtttatagagatttggca 33248369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 173 - 313
Target Start/End: Complemental strand, 33268686 - 33268541
Alignment:
Q  173 cgcccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattg 272  Q
    ||||||||||  ||||||||||||||| ||||||  || |||||| |||||||||||||||||||||||||| | || |||||| ||||||  |||||||    
T  33268686 cgcccctagctgcctaattgcggcattcgggttgcattaattgcaatctccaacaccttcattgtgttgggtgttaacgggtggatttagtctcacattg 33268587  T
Q  273 cctaga-----gatatggtttgtgtagtgtttataaagctttggca 313  Q
    ||||||      ||||||| ||||||||||||||| || |||||||    
T  33268586 cctagacatgtcatatggtctgtgtagtgtttatagagatttggca 33268541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 175 - 306
Target Start/End: Complemental strand, 12581526 - 12581394
Alignment:
Q  175 cccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaa-gggtggctttagttccacattgc 273  Q
    ||||||||| ||||| | |||||||||||||| |||  || ||   |||||||||||||||||||||||| ||||| |||||| |||||| |||| ||||    
T  12581526 cccctagccgcctaagtccggcatttgggttgcctttgtttcagcttccaacaccttcattgtgttgggtgtgaaatgggtggatttagtcccacgttgc 12581427  T
Q  274 ctagagatatggtttgtgtagtgtttataaagc 306  Q
    | | ||||||||  ||| |||||||||||||||    
T  12581426 ccaaagatatggcatgtttagtgtttataaagc 12581394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 189 - 300
Target Start/End: Complemental strand, 40566434 - 40566323
Alignment:
Q  189 attgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcctagagatatggttt 288  Q
    ||||||||| |||||||| ||||||| ||   |||||||||||||||||||||||| |||| || ||| || ||| ||| ||||||||| |||||||  |    
T  40566434 attgcggcagttgggttgccttcattacagcttccaacaccttcattgtgttgggtgtgaagggatggattcagtcccatattgcctagcgatatggcct 40566335  T
Q  289 gtgtagtgttta 300  Q
    ||||||||||||    
T  40566334 gtgtagtgttta 40566323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 178 - 284
Target Start/End: Original strand, 13978510 - 13978616
Alignment:
Q  178 ctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcctag 277  Q
    |||||| || ||||||| |||||| |||| ||||||||||| |||||| || ||||||||||||||| |||| || || ||||||| |||||||| ||||    
T  13978510 ctagccgcccaattgcgacatttgtgttgccttcattgcatcctccaatacgttcattgtgttgggtgtgaagggatgtctttagtcccacattgtctag 13978609  T
Q  278 agatatg 284  Q
    | |||||    
T  13978610 atatatg 13978616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 223 - 285
Target Start/End: Complemental strand, 51188948 - 51188886
Alignment:
Q  223 caacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcctagagatatgg 285  Q
    ||||||||||||||||||||||||||| |||||| |||||| ||||||||| |||||||||||    
T  51188948 caacaccttcattgtgttgggtttgaaggggtggatttagtcccacattgcttagagatatgg 51188886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 188 - 270
Target Start/End: Complemental strand, 33879947 - 33879865
Alignment:
Q  188 aattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    ||||||| | ||||| ||| ||||||||||  ||||||||||||||||||||||| ||||| ||||||| |||||| ||||||    
T  33879947 aattgcgacctttggtttgccttcattgcagcctccaacaccttcattgtgttggctttgagagggtggatttagtcccacat 33879865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 188 - 270
Target Start/End: Original strand, 33964308 - 33964390
Alignment:
Q  188 aattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    ||||||| | ||||| ||| ||||||||||  ||||||||||||||||||||||| ||||| ||||||| |||||| ||||||    
T  33964308 aattgcgacctttggtttgccttcattgcagcctccaacaccttcattgtgttggctttgagagggtggatttagtcccacat 33964390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 175 - 244
Target Start/End: Original strand, 14623129 - 14623198
Alignment:
Q  175 cccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggt 244  Q
    ||||||||| |||||| | ||| ||||||||| ||||||||||  |||||||||||||||||||||||||    
T  14623129 cccctagccgcctaatggtggcgtttgggttgccttcattgcagcctccaacaccttcattgtgttgggt 14623198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 190 - 276
Target Start/End: Original strand, 19459660 - 19459746
Alignment:
Q  190 ttgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgccta 276  Q
    ||||||||||||||||| ||  ||||||  ||||||| ||||||||||||||||| |||  |||||| |||||| ||||| ||||||    
T  19459660 ttgcggcatttgggttgcctaaattgcagcctccaactccttcattgtgttgggtgtgagggggtgggtttagtcccacaatgccta 19459746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 175 - 314
Target Start/End: Original strand, 12410327 - 12410467
Alignment:
Q  175 cccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccaca-ttgc 273  Q
    ||||||||  |||| ||||||||||||||||  |||  |||||  ||||||||||||||| ||||||||| |||| | || | |||||| ||||| || |    
T  12410327 cccctagctgcctagttgcggcatttgggttacctttgttgcagcctccaacaccttcatcgtgttgggtgtgaaggagttgatttagtcccacattttc 12410426  T
Q  274 ctagagatatggtttgtgtagtgtttataaagctttggcag 314  Q
     |||||||||||  | ||||||| |||||||| || |||||    
T  12410427 atagagatatggcctatgtagtgcttataaagtttgggcag 12410467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 268
Target Start/End: Original strand, 45264598 - 45264678
Alignment:
Q  188 aattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccac 268  Q
    ||||||||| ||||| ||| |||| |||||  ||||||||||||||||||||||| |||||  |||||| |||||| ||||    
T  45264598 aattgcggcctttggtttgccttctttgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccac 45264678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 314
Target Start/End: Complemental strand, 19810056 - 19810001
Alignment:
Q  259 ttagttccacattgcctagagatatggtttgtgtagtgtttataaagctttggcag 314  Q
    ||||| |||||||||||||| ||||||| |||||| |||||||||||||| |||||    
T  19810056 ttagtcccacattgcctagatatatggtctgtgtaatgtttataaagcttgggcag 19810001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 270
Target Start/End: Complemental strand, 2697500 - 2697418
Alignment:
Q  188 aattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    ||||| ||| ||||| ||||||||||||||  |||||||||||||||||||  || |||||  |||||| |||||| ||||||    
T  2697500 aattgaggcctttggtttgtcttcattgcagcctccaacaccttcattgtgacggctttgagggggtggatttagtcccacat 2697418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 270
Target Start/End: Complemental strand, 4022294 - 4022212
Alignment:
Q  188 aattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    ||||||||| ||||| ||| |||| | |||  ||||||||||||||||||||||| |||||  |||||| |||||| ||||||    
T  4022294 aattgcggcctttggtttgccttcgtcgcaacctccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 4022212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 308
Target Start/End: Original strand, 18998370 - 18998448
Alignment:
Q  230 ttcattgtgttgggtttgaaagggtggctttagttccacattgcctagagatatggtttgtgtagtgtttataaagctt 308  Q
    ||||||||||||||| |||| |||  |  |||||  |||||||||||||||||| | || |||||||||||||||||||    
T  18998370 ttcattgtgttgggtgtgaaggggcagacttagtctcacattgcctagagatattgcttttgtagtgtttataaagctt 18998448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 19937188 - 19937130
Alignment:
Q  212 attgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    ||||||| ||||||||||||||||||||||| |||||  |||||| |||||| ||||||    
T  19937188 attgcatcctccaacaccttcattgtgttggctttgatggggtggatttagtcccacat 19937130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 270
Target Start/End: Original strand, 31305666 - 31305728
Alignment:
Q  208 cttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    ||||||||||  ||||||||||||||||||||||| |||||  |||||| |||||| ||||||    
T  31305666 cttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 31305728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 284
Target Start/End: Complemental strand, 41590663 - 41590605
Alignment:
Q  226 caccttcattgtgttgggtttgaaagggtggctttagttccacattgcctagagatatg 284  Q
    ||||||||||||||||||| |||  |||||  |||||| ||||||||||||||||||||    
T  41590663 caccttcattgtgttgggtgtgagggggtgaatttagtcccacattgcctagagatatg 41590605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 175 - 284
Target Start/End: Complemental strand, 5087940 - 5087831
Alignment:
Q  175 cccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcc 274  Q
    |||||||||  ||||||| || |||||||||  ||||||||||  ||||||||||||||||||| ||  | | || |||||| || ||| || ||||||     
T  5087940 cccctagccgtctaattgtggtatttgggtttccttcattgcaacctccaacaccttcattgtgctgaatattaaggggtggattcagtccctcattgct 5087841  T
Q  275 tagagatatg 284  Q
    ||||||||||    
T  5087840 tagagatatg 5087831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 270
Target Start/End: Complemental strand, 8520242 - 8520180
Alignment:
Q  208 cttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    ||||||||||  ||||||| ||||||||||||||| |||||  |||||| |||||| ||||||    
T  8520242 cttcattgcagcctccaaccccttcattgtgttggctttgagggggtggatttagtcccacat 8520180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 228
Target Start/End: Complemental strand, 11636241 - 11636199
Alignment:
Q  186 ctaattgcggcatttgggttgtcttcattgcattctccaacac 228  Q
    |||||||| |||||||||||||||||||||||  |||||||||    
T  11636241 ctaattgcagcatttgggttgtcttcattgcagcctccaacac 11636199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 313
Target Start/End: Complemental strand, 17557890 - 17557767
Alignment:
Q  189 attgcggcatttgggtt-gtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcctagagatatggtt 287  Q
    ||||||||||||||||| |||||||||  |  ||||||||  ||||||||||  ||| |  | |||||  |||| | ||||||||||||||||||||       
T  17557890 attgcggcatttgggtttgtcttcattcaagcctccaacagattcattgtgtctggtgtacaggggtgaatttaatcccacattgcctagagatatgac- 17557792  T
Q  288 tgtgtagtgtttataaagctttggca 313  Q
     |||||||||||||||||||| ||||    
T  17557791 -gtgtagtgtttataaagcttaggca 17557767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 270
Target Start/End: Original strand, 20735477 - 20735539
Alignment:
Q  208 cttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    ||||||||||  ||||||||||||||||||||||| |||||  |||||| |||| | ||||||    
T  20735477 cttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttaatcccacat 20735539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 185 - 302
Target Start/End: Original strand, 8000443 - 8000565
Alignment:
Q  185 cctaattgcggcatttgggttg--tcttcattgcattctccaacaccttcattgtgttgggtttgaaa-gggtggctttagttccacattgcctagagat 281  Q
    ||||||||||||||||||||||  | |||||||||  ||||  ||| ||||||||||||||  | ||| |||||| |||| | | ||||| | |||||||    
T  8000443 cctaattgcggcatttgggttgccttttcattgcagcctccggcactttcattgtgttgggcgtcaaaggggtggatttattcctacatttcatagagat 8000542  T
Q  282 atgg--tttgtgtagtgtttata 302  Q
    ||||  | |||||||||||||||    
T  8000543 atggcatgtgtgtagtgtttata 8000565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 248
Target Start/End: Complemental strand, 8520384 - 8520344
Alignment:
Q  208 cttcattgcattctccaacaccttcattgtgttgggtttga 248  Q
    ||||||||||  ||||||||||||||||||||||| |||||    
T  8520384 cttcattgcagcctccaacaccttcattgtgttggctttga 8520344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 248
Target Start/End: Original strand, 15013480 - 15013520
Alignment:
Q  208 cttcattgcattctccaacaccttcattgtgttgggtttga 248  Q
    ||||||||||  ||||||||||||||||||||||| |||||    
T  15013480 cttcattgcaacctccaacaccttcattgtgttggctttga 15013520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 248
Target Start/End: Complemental strand, 35926370 - 35926330
Alignment:
Q  208 cttcattgcattctccaacaccttcattgtgttgggtttga 248  Q
    ||||||||||  ||||||||||||||||||||||| |||||    
T  35926370 cttcattgcaacctccaacaccttcattgtgttggctttga 35926330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 174 - 308
Target Start/End: Complemental strand, 52043261 - 52043127
Alignment:
Q  174 gcccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgc 273  Q
    ||||||| || ||||||||||| ||||| |||||||||||||||  |||||||||||||||||| | |||| |||| |||||| ||||||  ||||||||    
T  52043261 gcccctaaccacctaattgcggaatttgtgttgtcttcattgcagcctccaacaccttcattgtatcgggtgtgaaggggtggatttagtctcacattgc 52043162  T
Q  274 ctagagatatggtttgtgtagtgtttataaagctt 308  Q
    | | ||||||||| ||| |||||||||||||||||    
T  52043161 caaaagatatggtctgtttagtgtttataaagctt 52043127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 173 - 313
Target Start/End: Complemental strand, 26943055 - 26942916
Alignment:
Q  173 cgcccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattg 272  Q
    ||||||||||| ||||||||| | |||||| ||||||||||||||  || ||||||||| |||||||||||| ||||  ||||  ||||||  |||| ||    
T  26943055 cgcccctagccgcctaattgcagtatttggattgtcttcattgcagccttcaacacctttattgtgttgggtgtgaagaggtgaatttagtctcaca-tg 26942957  T
Q  273 cctagagatatggtttgtgtagtgtttataaagctttggca 313  Q
    |||||||||||||| ||||||||||||||||||||| ||||    
T  26942956 cctagagatatggtctgtgtagtgtttataaagcttaggca 26942916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 166 - 305
Target Start/End: Original strand, 48046269 - 48046409
Alignment:
Q  166 ttgcggtcgcccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaa-gggtggctttagtt 264  Q
    |||||||| || |||||| ||||||||  ||||| |||||| ||||||||||  |||||||||||||| | |||||||| ||||| |||||| ||||||     
T  48046269 ttgcggtcccctctagccgcctaattgtagcattggggttgccttcattgcaacctccaacaccttcactatgttgggtgtgaaaggggtggatttagtc 48046368  T
Q  265 ccacattgcctagagatatggtttgtgtagtgtttataaag 305  Q
    |||||||||||||||||||||  ||||||||||||| ||||    
T  48046369 ccacattgcctagagatatggcatgtgtagtgtttacaaag 48046409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 173 - 263
Target Start/End: Complemental strand, 26942771 - 26942681
Alignment:
Q  173 cgcccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagt 263  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||  ||||||||| ||||||||||||||| |||| |||||| ||||||    
T  26942771 cgcccctagccacctaattgcggtatttgggttgtcttcattgcaacctccaacacattcattgtgttgggtgtgaaggggtggatttagt 26942681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 174 - 305
Target Start/End: Complemental strand, 30491134 - 30491006
Alignment:
Q  174 gcccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgc 273  Q
    |||||||||| ||||||||| |||  ||||||| ||||||||||  |||||||||||||| |||||||||| |||| |||||| ||||| ||||||||||    
T  30491134 gcccctagccgcctaattgcagcacctgggttgccttcattgcagcctccaacaccttcaatgtgttgggtgtgaaggggtggatttag-tccacattgc 30491036  T
Q  274 ctagagatatggtttgtgtagtgtttataaag 305  Q
    ||||| ||||||  ||||  ||||||||||||    
T  30491035 ctagatatatggcctgtg--gtgtttataaag 30491006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 175 - 256
Target Start/End: Complemental strand, 26942554 - 26942473
Alignment:
Q  175 cccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtgg 256  Q
    ||||||||| |||||||  || |||||||||||||||||||||  ||||||||| ||||||||||||||| |||| ||||||    
T  26942554 cccctagccgcctaattagggtatttgggttgtcttcattgcaacctccaacacattcattgtgttgggtatgaaggggtgg 26942473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 180 - 308
Target Start/End: Complemental strand, 46332710 - 46332587
Alignment:
Q  180 agcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcctagag 279  Q
    |||| |||||||||||||||||||||| ||||||||||  || |||||| |||||||  |||||||| || |||||| |||||| |||     | |||||    
T  46332710 agccgcctaattgcggcatttgggttgccttcattgcagccttcaacacgttcattggattgggttttaaggggtggatttagtccca-----cttagag 46332616  T
Q  280 atatggtttgtgtagtgtttataaagctt 308  Q
    | |||  ||||||||||||||||||||||    
T  46332615 acatgtcttgtgtagtgtttataaagctt 46332587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 175 - 285
Target Start/End: Original strand, 22870575 - 22870685
Alignment:
Q  175 cccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcc 274  Q
    ||||||||| |||||||||  ||| |||||||  |||||||||  || |||||| |||||||||| | ||||||| | |||| |||||| |||||||||     
T  22870575 cccctagccgcctaattgcaccatctgggttgctttcattgcaaccttcaacacattcattgtgtagagtttgaaggtgtggatttagtcccacattgct 22870674  T
Q  275 tagagatatgg 285  Q
    |||||||||||    
T  22870675 tagagatatgg 22870685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 188 - 270
Target Start/End: Complemental strand, 53738377 - 53738295
Alignment:
Q  188 aattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    ||||||||| ||||| ||| ||||||||||  ||||||||||||||||||||||| |||||  |||||| |||||| ||||||    
T  53738377 aattgcggcctttggtttgccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 53738295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 183 - 280
Target Start/End: Complemental strand, 3137118 - 3137021
Alignment:
Q  183 ctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcctagaga 280  Q
    |||||||||  ||||||| ||||| |||||||| |  |||||||| | |||||||| |||||| ||| |||||| |||||| ||||||||||||||||    
T  3137118 ctcctaattctggcatttaggttgccttcattgtagcctccaacatcctcattgtgctgggttcgaatgggtggatttagtcccacattgcctagaga 3137021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 306
Target Start/End: Complemental strand, 23311629 - 23311521
Alignment:
Q  197 atttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcctagagatatggtttgtgtagtg 296  Q
    |||||| ||| |||| |||||  ||||||||||||  | |||||||||||||| |||||| |||||| | ||||||  |||||||||||  |||||||||    
T  23311629 atttggtttgccttctttgcagcctccaacacctttgt-gtgttgggtttgaaggggtggatttagtcctacattgtttagagatatggcatgtgtagtg 23311531  T
Q  297 tttataaagc 306  Q
    ||||||||||    
T  23311530 tttataaagc 23311521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 176 - 273
Target Start/End: Complemental strand, 54595242 - 54595145
Alignment:
Q  176 ccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgc 273  Q
    |||||||  ||||||||||||||||  |||| ||||||||||  |||||||||||||||||||  |||| |||| |||||| | |||| |||||||||    
T  54595242 ccctagctgcctaattgcggcatttaagttgccttcattgcaacctccaacaccttcattgtgcggggtgtgaaggggtggatatagtcccacattgc 54595145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 173 - 235
Target Start/End: Complemental strand, 3137347 - 3137285
Alignment:
Q  173 cgcccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcatt 235  Q
    ||||||||||||||| |||||| ||||| ||||| ||||||||||  ||||||||||||||||    
T  3137347 cgcccctagcctcctgattgcgacatttaggttgccttcattgcagcctccaacaccttcatt 3137285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 188 - 270
Target Start/End: Original strand, 15665087 - 15665170
Alignment:
Q  188 aattgcggcatttgggtt-gtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    ||||||| | |||||||| | ||||||||||  ||||||||||||||||||||||| |||||  |||||| |||||| ||||||    
T  15665087 aattgcgacctttgggttagccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 15665170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 187 - 270
Target Start/End: Complemental strand, 29669847 - 29669765
Alignment:
Q  187 taattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    |||||||||| ||||| | | ||||||||||  ||||||||||||||||||||||| |||| | |||||| |||||| ||||||    
T  29669847 taattgcggcctttggttagccttcattgcagcctccaacaccttcattgtgttggctttg-aggggtggatttagtcccacat 29669765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 187 - 270
Target Start/End: Complemental strand, 36558636 - 36558553
Alignment:
Q  187 taattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    |||||||||| ||||| ||| |||||| |||  |||||||||||||| |||||||| |||||  |||||| |||||| ||||||    
T  36558636 taattgcggcctttggtttgccttcatagcaacctccaacaccttcactgtgttggctttgagggggtggatttagtcccacat 36558553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 270
Target Start/End: Original strand, 43972290 - 43972372
Alignment:
Q  188 aattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    ||||||||| ||||  ||| ||||||||||  ||||||||||||||||||||||| |||||  |||||  |||||| ||||||    
T  43972290 aattgcggcctttgatttgccttcattgcagcctccaacaccttcattgtgttggttttgagggggtgaatttagtcccacat 43972372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 270
Target Start/End: Complemental strand, 45427401 - 45427339
Alignment:
Q  208 cttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    ||||||||||  ||||||||||||||||||||||| |||||  |||||| |||||| ||||||    
T  45427401 cttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 45427339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 176 - 285
Target Start/End: Complemental strand, 3137814 - 3137706
Alignment:
Q  176 ccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcct 275  Q
    ||||| || ||||||||| | ||||  |||| ||||||||||  || |||||||||||||||||| ||| ||||  ||||| |||||| | ||||| |||    
T  3137814 ccctacccacctaattgcaggatttaagttgccttcattgcagcctgcaacaccttcattgtgtt-ggtgtgaattggtggatttagtccgacattccct 3137716  T
Q  276 agagatatgg 285  Q
    ||||||||||    
T  3137715 agagatatgg 3137706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 244
Target Start/End: Complemental strand, 44898883 - 44898835
Alignment:
Q  196 catttgggttgtcttcattgcattctccaacaccttcattgtgttgggt 244  Q
    |||||||| || ||||||||||  |||||||||||||||||||||||||    
T  44898883 catttgggctgccttcattgcagcctccaacaccttcattgtgttgggt 44898835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 187 - 270
Target Start/End: Original strand, 991138 - 991221
Alignment:
Q  187 taattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    |||||||| | ||||| | | ||| ||||||  ||||||||||||||||||||||| |||||  |||||| |||||| ||||||    
T  991138 taattgcgacctttggttagccttaattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 991221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 187 - 270
Target Start/End: Complemental strand, 29669532 - 29669450
Alignment:
Q  187 taattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    ||||||| || ||||| | | ||||||||||  ||||||||||||||||||||||| |||| | |||||| |||||| ||||||    
T  29669532 taattgctgcctttggttagccttcattgcagcctccaacaccttcattgtgttggctttg-aggggtggatttagtcccacat 29669450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 176 - 307
Target Start/End: Complemental strand, 54595558 - 54595427
Alignment:
Q  176 ccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcct 275  Q
    |||||||| ||||| ||  ||||||| ||||  |||||| ||  | ||||||||||||||||||||| | |||| || |||  ||| | |||| ||||||    
T  54595558 ccctagccgcctaagtgttgcatttgtgttgctttcattacagccaccaacaccttcattgtgttggttgtgaagggatggaattaatcccacgttgcct 54595459  T
Q  276 agagatatggtttgtgtagtgtttataaagct 307  Q
    ||||| | || |||||||||| || |||||||    
T  54595458 agagacacggcttgtgtagtgcttttaaagct 54595427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 192 - 263
Target Start/End: Original strand, 56509548 - 56509619
Alignment:
Q  192 gcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagt 263  Q
    ||||| ||||| ||| ||||||||||   |||||||||||||||||||||| |||||  |||||| ||||||    
T  56509548 gcggcctttggtttgccttcattgcagcttccaacaccttcattgtgttggctttgagggggtggatttagt 56509619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 270
Target Start/End: Original strand, 50857979 - 50858029
Alignment:
Q  220 ctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    ||||||||||||||||||||||| |||||  |||||| |||||| ||||||    
T  50857979 ctccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 50858029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 270
Target Start/End: Original strand, 50858295 - 50858345
Alignment:
Q  220 ctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    ||||||||||||||||||||||| |||||  |||||| |||||| ||||||    
T  50858295 ctccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 50858345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 270
Target Start/End: Original strand, 53740149 - 53740199
Alignment:
Q  220 ctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    ||||||||||||||||||||||| |||||  |||||| |||||| ||||||    
T  53740149 ctccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 53740199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 45427084 - 45427031
Alignment:
Q  209 ttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttag 262  Q
    |||||||||  ||||||||||||||||||||||| |||||  |||||| |||||    
T  45427084 ttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttag 45427031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 49544267 - 49544328
Alignment:
Q  187 taattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttga 248  Q
    |||||||||| ||||| | | ||||||||||  |||||||||||| |||||||||| |||||    
T  49544267 taattgcggcctttggttagccttcattgcagcctccaacaccttgattgtgttggctttga 49544328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 268
Target Start/End: Original strand, 43971994 - 43972054
Alignment:
Q  208 cttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccac 268  Q
    ||||||||||  ||||||||||||||||||||||| ||| |  |||||| |||||| ||||    
T  43971994 cttcattgcagcctccaacaccttcattgtgttggctttaagggggtggatttagtcccac 43972054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 272
Target Start/End: Original strand, 52214582 - 52214634
Alignment:
Q  220 ctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattg 272  Q
    ||||||||||||||||||||||| |||||  ||||||  ||||| ||||||||    
T  52214582 ctccaacaccttcattgtgttggctttgagggggtggaattagtcccacattg 52214634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 7e-28; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 177 - 308
Target Start/End: Complemental strand, 34250532 - 34250401
Alignment:
Q  177 cctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgccta 276  Q
    ||||||| |||||||||| ||||||||||| ||||||||||  |||||||||||| |||||||| |||||||| |||||  ||| || ||||||||| ||    
T  34250532 cctagccgcctaattgcgacatttgggttgccttcattgcagcctccaacaccttaattgtgttaggtttgaaggggtgaatttcgtcccacattgctta 34250433  T
Q  277 gagatatggtttgtgtagtgtttataaagctt 308  Q
    ||||||| | ||||||||| || |||||||||    
T  34250432 gagatattgattgtgtagttttaataaagctt 34250401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 173 - 308
Target Start/End: Original strand, 51917800 - 51917935
Alignment:
Q  173 cgcccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattg 272  Q
    ||||||||||  ||||||||  |||||||||||| ||||||||||  || |||| |||||||| ||||| || ||||||||||| |||||| | ||||||    
T  51917800 cgcccctagctgcctaattgaagcatttgggttgccttcattgcaaccttcaacgccttcattatgttgagtgtgaaagggtggatttagtcctacattg 51917899  T
Q  273 cctagagatatggtttgtgtagtgtttataaagctt 308  Q
    |||||||||||||  | |||||||||||||||||||    
T  51917900 cctagagatatggcatatgtagtgtttataaagctt 51917935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 173 - 301
Target Start/End: Original strand, 662646 - 662774
Alignment:
Q  173 cgcccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattg 272  Q
    ||||||||| | |||||||||| ||||||||||| ||||||||||  |||||||||||| ||||||||||||||||| |||| | |||||| |||| ||     
T  662646 cgcccctagtcgcctaattgcgccatttgggttgccttcattgcagcctccaacacctttattgtgttgggtttgaaggggtcgatttagtcccactttt 662745  T
Q  273 cctagagatatggtttgtgtagtgtttat 301  Q
    | ||||||||||   ||||||||||||||    
T  662746 cttagagatatgacctgtgtagtgtttat 662774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 174 - 308
Target Start/End: Original strand, 54861446 - 54861580
Alignment:
Q  174 gcccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgc 273  Q
    |||||||||| ||||| ||||||||  |||||||||||||||||  ||||||||||||| ||||||||||| |||| |||||| ||||||  ||| ||||    
T  54861446 gcccctagccgcctaactgcggcatacgggttgtcttcattgcagcctccaacaccttcgttgtgttgggtgtgaaggggtggatttagtctcactttgc 54861545  T
Q  274 ctagagatatggtttgtgtagtgtttataaagctt 308  Q
    || || ||||||  | || ||||||||||||||||    
T  54861546 ctggacatatggcatatgcagtgtttataaagctt 54861580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 178 - 285
Target Start/End: Complemental strand, 39225208 - 39225097
Alignment:
Q  178 ctagcctcctaattgcggcatttgggttgtcttcattgcattctccaaca----ccttcattgtgttgggtttgaaagggtggctttagttccacattgc 273  Q
    |||||| |||||||||||||||||||||| ||||| ||||  ||||||||    ||||||||||||||||| |||| | |||| |||||| || ||||||    
T  39225208 ctagccgcctaattgcggcatttgggttgccttcactgcagcctccaacatacaccttcattgtgttgggtgtgaaggcgtgggtttagtcccgcattgc 39225109  T
Q  274 ctagagatatgg 285  Q
    ||||||||||||    
T  39225108 ctagagatatgg 39225097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 175 - 314
Target Start/End: Original strand, 25568419 - 25568558
Alignment:
Q  175 cccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcc 274  Q
    ||||||| | ||| ||| || ||||||||||| || |||||||  |||||||||||||  |||||||||| |||| |||||| |||||  ||||||||||    
T  25568419 cccctagacaccttattacgacatttgggttgcctacattgcagcctccaacaccttctctgtgttgggtgtgaaggggtgggtttagcaccacattgcc 25568518  T
Q  275 tagagatatggtttgtgtagtgtttataaagctttggcag 314  Q
    |||||| |||   | ||||||||||||||| ||| |||||    
T  25568519 tagagacatgacctttgtagtgtttataaaccttgggcag 25568558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 176 - 314
Target Start/End: Original strand, 35035023 - 35035161
Alignment:
Q  176 ccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcct 275  Q
    |||||||| ||  |||||| |||||| |||| |||| |||||  || |||||||||||||||||| |||||||| ||||||  |||||  |||||| | |    
T  35035023 ccctagccaccctattgcgacatttgagttgccttcgttgcaaccttcaacaccttcattgtgttaggtttgaaggggtggacttagtctcacatttctt 35035122  T
Q  276 agagatatggtttgtgtagtgtttataaagctttggcag 314  Q
    |||||||||| ||||||  | |||||||||||| |||||    
T  35035123 agagatatggcttgtgttctatttataaagcttgggcag 35035161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 175 - 306
Target Start/End: Original strand, 351102 - 351236
Alignment:
Q  175 cccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaaca---ccttcattgtgttgggtttgaaagggtggctttagttccacatt 271  Q
    ||||||| | |||||||||||||||||  ||| ||| ||||||  || ||| |   |||||||||||||| ||||||| ||||||||||||| |||||||    
T  351102 cccctagtcgcctaattgcggcatttgttttgccttaattgcagccttcaataataccttcattgtgttgagtttgaaggggtggctttagtcccacatt 351201  T
Q  272 gcctagagatatggtttgtgtagtgtttataaagc 306  Q
    || || |||| ||   |||||||||||||||||||    
T  351202 gcttacagatgtgacatgtgtagtgtttataaagc 351236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 173 - 270
Target Start/End: Complemental strand, 14170184 - 14170086
Alignment:
Q  173 cgcccctagcctcctaa-ttgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    ||||||||||| ||||| ||||||||||||| ||| ||||||||||  ||||| ||||||||||||||||| |||||  || ||| |||||| ||||||    
T  14170184 cgcccctagccgcctaaattgcggcatttggtttgccttcattgcagcctccatcaccttcattgtgttggctttgaggggctggatttagtcccacat 14170086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 32 - 125
Target Start/End: Original strand, 39175533 - 39175622
Alignment:
Q  32 gcatcaagcctatcaaataccgaaaccaaggaatctggtatgggttttctttctccactcacatttagaatatgtctttccaatgtcagttttt 125  Q
    ||||||||||||| |||||| ||||||||||||||  ||||||||||||||| |    |||| ||||||  || ||||||||||||||||||||    
T  39175533 gcatcaagcctattaaatactgaaaccaaggaatccagtatgggttttcttttt----tcacttttagatcatatctttccaatgtcagttttt 39175622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 188 - 263
Target Start/End: Complemental strand, 24860229 - 24860154
Alignment:
Q  188 aattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagt 263  Q
    ||||||||| ||||| ||| ||||||||||  ||||||||||||||||||||||| |||||  |||||| ||||||    
T  24860229 aattgcggcctttggtttgccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagt 24860154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 220 - 314
Target Start/End: Complemental strand, 45016970 - 45016876
Alignment:
Q  220 ctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcctagagatatggtttgtgtagtgtttataaagctttggcag 314  Q
    |||||| |||||||||||||| ||| | || |||||  |||| ||||||||||| |  |||||||  |||||||||||||||||||||| |||||    
T  45016970 ctccaataccttcattgtgttaggtgtaaatgggtgaatttaattccacattgcttttagatatgacttgtgtagtgtttataaagcttgggcag 45016876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 272
Target Start/End: Complemental strand, 13769440 - 13769376
Alignment:
Q  208 cttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattg 272  Q
    ||||||||||  ||||||||||||||||||||||| |||||  |||||| |||||| ||||||||    
T  13769440 cttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccacattg 13769376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 272
Target Start/End: Original strand, 45443235 - 45443299
Alignment:
Q  208 cttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattg 272  Q
    ||||||||||  ||||||||||||||||||||||| |||||  |||||| |||||| ||||||||    
T  45443235 cttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccacattg 45443299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 187 - 270
Target Start/End: Original strand, 41380658 - 41380741
Alignment:
Q  187 taattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    |||||||| | ||||| | | ||||||||||  ||||||||||||||||||||||| |||||  |||||| |||||| ||||||    
T  41380658 taattgcgacctttggttagccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 41380741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 197 - 272
Target Start/End: Original strand, 46139176 - 46139251
Alignment:
Q  197 atttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattg 272  Q
    |||||| | ||||||||||||  |||||||| |||||||||||||| |||||  |||||  |||||||||||||||    
T  46139176 atttggttagtcttcattgcaacctccaacatcttcattgtgttggctttgagggggtgaatttagttccacattg 46139251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 270
Target Start/End: Complemental strand, 43101520 - 43101458
Alignment:
Q  208 cttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    ||||||||||  ||||||||||||||||||||||| |||||  |||||| |||||| ||||||    
T  43101520 cttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 43101458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 270
Target Start/End: Original strand, 54368994 - 54369056
Alignment:
Q  208 cttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    ||||||||||  ||||||||||||||||||||||| |||||  |||||| |||||| ||||||    
T  54368994 cttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 54369056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 208 - 263
Target Start/End: Complemental strand, 50204006 - 50203951
Alignment:
Q  208 cttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagt 263  Q
    ||||||||||  ||||||||||||||||||||||| |||||  |||||| ||||||    
T  50204006 cttcattgcagcctccaacaccttcattgtgttggctttgagggggtgggtttagt 50203951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 270
Target Start/End: Original strand, 3985712 - 3985790
Alignment:
Q  192 gcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    ||||| ||||| ||| |||||| |||  |||||||||||||| |||||||| |||||  |||||| |||||| ||||||    
T  3985712 gcggcctttggtttgccttcatagcagcctccaacaccttcactgtgttggctttgagggggtggatttagtcccacat 3985790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 270
Target Start/End: Original strand, 4255477 - 4255527
Alignment:
Q  220 ctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    ||||||||||||||||||||||| |||||  |||||| |||||| ||||||    
T  4255477 ctccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 4255527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 270
Target Start/End: Original strand, 4256189 - 4256251
Alignment:
Q  208 cttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    ||||||||||  |||||||||||| |||||||||| |||||  |||||| |||||| ||||||    
T  4256189 cttcattgcagcctccaacacctttattgtgttggctttgagggggtggatttagtcccacat 4256251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 270
Target Start/End: Original strand, 44573293 - 44573343
Alignment:
Q  220 ctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    ||||||||||||||||||||||| |||||  |||||| |||||| ||||||    
T  44573293 ctccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 44573343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 7e-28; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 179 - 314
Target Start/End: Original strand, 18183392 - 18183527
Alignment:
Q  179 tagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcctaga 278  Q
    ||||| ||||| ||||||||||| |||| ||||||||||  ||||||||||||||||||||||||| |||  || ||| |||||| |   ||||||| ||    
T  18183392 tagccgcctaagtgcggcatttgagttgccttcattgcagcctccaacaccttcattgtgttgggtgtgatgggatggatttagtcctgaattgccttga 18183491  T
Q  279 gatatggtttgtgtagtgtttataaagctttggcag 314  Q
    ||||||| |||||||||||||||||||||| |||||    
T  18183492 gatatggcttgtgtagtgtttataaagcttgggcag 18183527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 166 - 304
Target Start/End: Complemental strand, 26761018 - 26760879
Alignment:
Q  166 ttgcggtc-gcccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagtt 264  Q
    |||||||| |||||||||| |||||| | ||||||||||||| ||| || |||   | ||||||||| ||||||||| ||||||| |||||| ||||||     
T  26761018 ttgcggtctgcccctagccgcctaatcgtggcatttgggttgccttgatggcagcattcaacacctttattgtgttgagtttgaaggggtgggtttagtc 26760919  T
Q  265 ccacattgcctagagatatggtttgtgtagtgtttataaa 304  Q
    ||||||||| |||||||||||  ||||| ||| |||||||    
T  26760918 ccacattgcttagagatatggcctgtgtggtgattataaa 26760879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 185 - 306
Target Start/End: Original strand, 21373915 - 21374045
Alignment:
Q  185 cctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaa---------gggtggctttagttccacattgcct 275  Q
    |||| |||||||||||| |||| ||||||||||  |||||||||| | |||||||||||| |||||         |||||  |||||| |||||||||||    
T  21373915 cctacttgcggcatttgtgttgccttcattgcagcctccaacaccattattgtgttgggtgtgaaagggccaaaggggtgaatttagtcccacattgcct 21374014  T
Q  276 agagatatggtttgtgtagtgtttataaagc 306  Q
    ||||||||||  |||||||||||||||||||    
T  21374015 agagatatggcctgtgtagtgtttataaagc 21374045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 176 - 284
Target Start/End: Original strand, 43203479 - 43203588
Alignment:
Q  176 ccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttca-ttgtgttgggtttgaaagggtggctttagttccacattgcc 274  Q
    ||||||||  ||||||| |||| |||||||||||||||||||||||||| |||||| | |||||||||||  ||| || ||| |||||| |||| ||| |    
T  43203479 ccctagccgactaattgtggcagttgggttgtcttcattgcattctccagcaccttaatttgtgttgggtccgaagggttggatttagtcccacgttgtc 43203578  T
Q  275 tagagatatg 284  Q
    ||||||||||    
T  43203579 tagagatatg 43203588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 175 - 286
Target Start/End: Original strand, 1544073 - 1544185
Alignment:
Q  175 cccctagcctcctaattgcggcatttgggt--tgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattg 272  Q
    ||||||||| ||||||||||||||||||||  ||||||| ||||   ||||||||||||||||||||||||| || |||||| | |||| | ||||||||    
T  1544073 cccctagccacctaattgcggcatttgggttatgtcttctttgccacctccaacaccttcattgtgttgggtgtg-aagggtaggtttattcccacattg 1544171  T
Q  273 cctagagatatggt 286  Q
     ||  |||||||||    
T  1544172 tctcaagatatggt 1544185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 223 - 308
Target Start/End: Original strand, 14407958 - 14408044
Alignment:
Q  223 caacaccttcattgtgttgggtttgaaagggt-ggctttagttccacattgcctagagatatggtttgtgtagtgtttataaagctt 308  Q
    ||||||||||||||||||| || |||| |||| || ||| ||  ||||||| ||||||||||||| |||||||||||||||||||||    
T  14407958 caacaccttcattgtgttgagtgtgaaggggttggatttggtctcacattgtctagagatatggtctgtgtagtgtttataaagctt 14408044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 175 - 308
Target Start/End: Complemental strand, 5511983 - 5511851
Alignment:
Q  175 cccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcc 274  Q
    ||||||||  || |||||||||||| |||||| |||||||  |   |||||| |||||||||||||| || |||| |||||  |||||| | | ||||||    
T  5511983 cccctagctgccaaattgcggcattagggttgccttcattatagcttccaacgccttcattgtgttgtgtgtgaaggggtgtatttagtccaatattgcc 5511884  T
Q  275 tagagatatggtttgtgtagtgtttataaagctt 308  Q
    ||||||||| | ||| ||||||||||||||||||    
T  5511883 tagagatatagcttg-gtagtgtttataaagctt 5511851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 175 - 275
Target Start/End: Complemental strand, 9889508 - 9889407
Alignment:
Q  175 cccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtgg-ctttagttccacattgc 273  Q
    |||||||| ||||||||| ||||||||||||| ||||||||||  |||| ||| ||||||||| |||||| |||| || |||  |||||| |||||||||    
T  9889508 cccctagcttcctaattgtggcatttgggttgccttcattgcaacctccgacatcttcattgtattgggtgtgaagggatggattttagtcccacattgc 9889409  T
Q  274 ct 275  Q
    ||    
T  9889408 ct 9889407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 185 - 314
Target Start/End: Original strand, 39583432 - 39583561
Alignment:
Q  185 cctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcctagagatatg 284  Q
    |||||||||||||||||||||| |||||||||| |||||||||| | |||||||||  || ||||  ||||| |||||| ||   ||||||||||| |||    
T  39583432 cctaattgcggcatttgggttgccttcattgcagtctccaacacttccattgtgttcagtgtgaagaggtggatttagtcccttgttgcctagagaaatg 39583531  T
Q  285 gtttgtgtagtgtttataaagctttggcag 314  Q
    |  ||  ||||| |||||||| || |||||    
T  39583532 gcatgcctagtgcttataaagtttgggcag 39583561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 187 - 270
Target Start/End: Complemental strand, 15820271 - 15820188
Alignment:
Q  187 taattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    |||||||||| ||||| ||| ||| ||||||  ||||||||||||||||||||||| |||||  |||||| |||||| ||||||    
T  15820271 taattgcggcctttggtttgcctttattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 15820188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 186 - 277
Target Start/End: Original strand, 33070355 - 33070446
Alignment:
Q  186 ctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcctag 277  Q
    |||||||||||||||||||||||| |||||||| || || |||||||||| |||||||| |||   ||||  ||||| ||||||||| ||||    
T  33070355 ctaattgcggcatttgggttgtctccattgcatccttcagcaccttcattatgttgggtgtgaggaggtgaatttagatccacattgtctag 33070446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 188 - 270
Target Start/End: Complemental strand, 5424925 - 5424843
Alignment:
Q  188 aattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    ||||||||| ||||| ||  ||||||||||  ||||||||||||||||||||||  ||||| ||||||| |||||| ||||||    
T  5424925 aattgcggcctttggttttccttcattgcagcctccaacaccttcattgtgttgcctttgagagggtgggtttagtcccacat 5424843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 220 - 282
Target Start/End: Complemental strand, 11339833 - 11339771
Alignment:
Q  220 ctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcctagagata 282  Q
    ||||||||||||||||||||| |||  |||||||||| |||||| ||||| ||||||||||||    
T  11339833 ctccaacaccttcattgtgttaggtgcgaaagggtggatttagtcccacactgcctagagata 11339771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 248
Target Start/End: Complemental strand, 43688591 - 43688531
Alignment:
Q  188 aattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttga 248  Q
    ||||||||| ||||| ||||||||||||||  |||||||||||||||| |||||| |||||    
T  43688591 aattgcggcctttggtttgtcttcattgcagcctccaacaccttcattatgttggctttga 43688531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 283
Target Start/End: Complemental strand, 3004044 - 3003981
Alignment:
Q  220 ctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcctagagatat 283  Q
    ||||||||||||||||||||||||| |||  || ||| |||||| ||||| |||||||||||||    
T  3004044 ctccaacaccttcattgtgttgggtgtgaggggatgggtttagtcccacaatgcctagagatat 3003981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 176 - 215
Target Start/End: Complemental strand, 26580231 - 26580192
Alignment:
Q  176 ccctagcctcctaattgcggcatttgggttgtcttcattg 215  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  26580231 ccctagccgcctaattgcggcatttgggttgtcttcattg 26580192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 270
Target Start/End: Complemental strand, 18902013 - 18901951
Alignment:
Q  208 cttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    ||||||||||  ||||||||||||||||||||||| |||||  |||||| |||||| ||||||    
T  18902013 cttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 18901951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 285
Target Start/End: Original strand, 14522432 - 14522532
Alignment:
Q  185 cctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcctagagatatg 284  Q
    |||||| | |||||||| ||||| |||||||||  |||||| |||||||||||| ||||| | || || ||| |||| | ||||||||| |||| |||||    
T  14522432 cctaatagtggcatttgagttgtattcattgcagcctccaataccttcattgtgatgggtgtaaagggctggatttaatcccacattgcatagatatatg 14522531  T
Q  285 g 285  Q
    |    
T  14522532 g 14522532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 21214022 - 21213970
Alignment:
Q  220 ctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattg 272  Q
    ||||||||||||||||||||||| |||||  |||||| |||||| ||||||||    
T  21214022 ctccaacaccttcattgtgttggctttgagggggtggatttagtcccacattg 21213970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 208 - 263
Target Start/End: Original strand, 7877799 - 7877854
Alignment:
Q  208 cttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagt 263  Q
    |||||||||| ||||||||| |||||||||||||| |||||  |||||| ||||||    
T  7877799 cttcattgcagtctccaacatcttcattgtgttggctttgagggggtggatttagt 7877854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 187 - 262
Target Start/End: Original strand, 17509043 - 17509118
Alignment:
Q  187 taattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttag 262  Q
    |||||||| | ||||| | | ||||||||||  ||||||||||||||||||||||| |||||  |||||| |||||    
T  17509043 taattgcgacctttggttagccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttag 17509118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 270
Target Start/End: Complemental strand, 3976608 - 3976558
Alignment:
Q  220 ctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    ||||||||||||||||||||||| |||||  |||||| |||||| ||||||    
T  3976608 ctccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 3976558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 270
Target Start/End: Original strand, 43169209 - 43169259
Alignment:
Q  220 ctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    ||||||||||||||||||||||| |||||  |||||| |||||| ||||||    
T  43169209 ctccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 43169259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 249
Target Start/End: Complemental strand, 45636376 - 45636302
Alignment:
Q  176 ccctagcctcctaattgcggcatttgggttgtcttcatt-gcattctccaacaccttcattgtgttgggtttgaa 249  Q
    |||||| | ||| ||||||||||||||| || ||| ||| ||| |||| ||||||||||||||||||||| ||||    
T  45636376 ccctagacgccttattgcggcatttggggtgccttgatttgcagtctcaaacaccttcattgtgttgggtatgaa 45636302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 270
Target Start/End: Complemental strand, 20135153 - 20135069
Alignment:
Q  185 cctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    |||||||| |||||||| |||| ||||||||||   |||||||||||||||| | ||||| || |||||| | |||||| ||||||    
T  20135153 cctaattgtggcatttgtgttgccttcattgcagattccaacaccttcattgcgctgggtgtg-aagggttgatttagtcccacat 20135069  T

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Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 280
Target Start/End: Original strand, 35872850 - 35872902
Alignment:
Q  228 ccttcattgtgttgggtttgaaagggtggctttagttccacattgcctagaga 280  Q
    ||||||||||||||||| |||| |||||| |||| | |||||||| |||||||    
T  35872850 ccttcattgtgttgggtgtgaaggggtggatttattcccacattgactagaga 35872902  T

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Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 173 - 285
Target Start/End: Complemental strand, 1206048 - 1205936
Alignment:
Q  173 cgcccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattg 272  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||  ||||| ||||||||| ||||| ||| |||| |||||| |||||| |  || ||    
T  1206048 cgcccctagccgcctaattgcggcatttgggttgccttcattgcagcctccagcaccttcatcgtgttaggtgtgaaggggtggatttagtccatcaatg 1205949  T
Q  273 cctagagatatgg 285  Q
    | |||||||||||    
T  1205948 cttagagatatgg 1205936  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 185 - 308
Target Start/End: Original strand, 18286817 - 18286940
Alignment:
Q  185 cctaattgcggcattt-gggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcctagagatat 283  Q
    |||||||||||||||| ||||||  |||||||||| ||||||||||||||  ||||||||| |||| |||| | |||||| ||||||| |||||||||||    
T  18286817 cctaattgcggcattttgggttgggttcattgcatcctccaacaccttcaccgtgttgggtgtgaaggggttgatttagtcccacatttcctagagatat 18286916  T
Q  284 ggtttgtgtagtgtttataaagctt 308  Q
    ||  | ||||||| |||||||||||    
T  18286917 ggcctatgtagtg-ttataaagctt 18286940  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 185 - 305
Target Start/End: Original strand, 9237091 - 9237214
Alignment:
Q  185 cctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcctaga---gat 281  Q
    ||||||||||| |||||  ||| |||||||||| ||||||||||||||||||||||| || ||||   |||| |||||||||||||||||| ||    ||    
T  9237091 cctaattgcggtatttgtcttgccttcattgcactctccaacaccttcattgtgttgtgtgtgaagtagtggatttagttccacattgcctcgatattat 9237190  T
Q  282 atggtttgtgtagtgtttataaag 305  Q
    |||| | |||||||||||||||||    
T  9237191 atggctcgtgtagtgtttataaag 9237214  T

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Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 174 - 263
Target Start/End: Complemental strand, 9602170 - 9602081
Alignment:
Q  174 gcccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagt 263  Q
    |||||||||| ||||||||| |||||||| ||| ||||||| ||   |||||||||||||||||||||||| |||| |||||| ||||||    
T  9602170 gcccctagccgcctaattgcagcatttggattgccttcattccagcttccaacaccttcattgtgttgggtgtgaaggggtggatttagt 9602081  T

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Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 175 - 263
Target Start/End: Complemental strand, 32055 - 31967
Alignment:
Q  175 cccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagt 263  Q
    ||||||| | ||||||||||||||||  |||| |||||||||| ||||||||||||||||| |||||| |||||  |||||| ||||||    
T  32055 cccctagtcacctaattgcggcatttaagttgccttcattgcagtctccaacaccttcattttgttggctttgagggggtggatttagt 31967  T

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Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 208 - 304
Target Start/End: Complemental strand, 9156250 - 9156154
Alignment:
Q  208 cttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcctagagatatggtttgtgtagtgtttataaa 304  Q
    ||||||||||| |||||||||||||| |||||| |||||||| |||||| |||| | |||||| || | ||||||| |  |||||||||||||||||    
T  9156250 cttcattgcatcctccaacaccttcactgtgttaggtttgaaggggtggatttattcccacatcgctttgagatatagcatgtgtagtgtttataaa 9156154  T

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Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 175 - 256
Target Start/End: Complemental strand, 1205732 - 1205651
Alignment:
Q  175 cccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtgg 256  Q
    ||||||||| |||||||| ||||||||||||  ||||||||||  || |||||| ||||||||||||||| |||| ||||||    
T  1205732 cccctagccgcctaattgtggcatttgggtttccttcattgcagcctacaacactttcattgtgttgggtgtgaaggggtgg 1205651  T

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Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 229 - 314
Target Start/End: Complemental strand, 1206307 - 1206222
Alignment:
Q  229 cttcattgtgttgggtttgaaagggtggctttagttccacattgcctagagatatggtttgtgtagtgtttataaagctttggcag 314  Q
    |||||||||||||||| |||| || ||  |||||| ||||||| ||||||||||||   ||||||||||||||||||||| |||||    
T  1206307 cttcattgtgttgggtgtgaagggatgaatttagtcccacatttcctagagatatgtcctgtgtagtgtttataaagcttaggcag 1206222  T

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Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 264
Target Start/End: Complemental strand, 130853 - 130760
Alignment:
Q  173 cgcccctagcctcctaattgcggcatttggg-ttgtcttcattgcattctccaaca-ccttcattgtgttgggtttgaaagggtggctttagtt 264  Q
    ||||||||||| ||||| ||| |||| |||| ||| ||||||||||  |||||||| ||||||||||||||||| |||| |||||| |||||||    
T  130853 cgcccctagccgcctaactgcagcatatggggttgccttcattgcagcctccaacaaccttcattgtgttgggtgtgaaggggtggatttagtt 130760  T

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Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 173 - 256
Target Start/End: Original strand, 9216755 - 9216838
Alignment:
Q  173 cgcccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtgg 256  Q
    ||||||||||  | |||||| |||||||| ||||||||||||||| || ||||||| ||||||||| | ||| |||| ||||||    
T  9216755 cgcccctagcagcataattgtggcatttgtgttgtcttcattgcagtcaccaacacattcattgtgcttggtgtgaaggggtgg 9216838  T

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Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 213 - 284
Target Start/End: Complemental strand, 12308635 - 12308564
Alignment:
Q  213 ttgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcctagagatatg 284  Q
    |||||| |||||||||||||||||||||| |||||||| ||||| ||||||  |||||| | |||| |||||    
T  12308635 ttgcatcctccaacaccttcattgtgttgagtttgaaaaggtggatttagtctcacattacttagaaatatg 12308564  T

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Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 270
Target Start/End: Complemental strand, 10418487 - 10418425
Alignment:
Q  208 cttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    ||||||||||  ||||||||||||||||||||||| |||||  |||||| |||||| ||||||    
T  10418487 cttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 10418425  T

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Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 270
Target Start/End: Complemental strand, 12134652 - 12134570
Alignment:
Q  188 aattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    ||||||||| ||||| ||| ||||||||||  |||||| |||||||||||||||| |||||  ||||||  ||||| ||||||    
T  12134652 aattgcggcctttggtttgccttcattgcagcctccaataccttcattgtgttggctttgacggggtggacttagtcccacat 12134570  T

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Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 305
Target Start/End: Original strand, 16509699 - 16509829
Alignment:
Q  176 ccctagcctcctaattgcggcatttgggttgtcttcattgcattctccaacaccttcatt-gtgttgggtttgaaagggtggctttagttccacattgcc 274  Q
    |||||||  ||| |||||| ||||||||||| ||||||||||   | |||| |||||||| ||| ||| | |||| |||||| |||||| ||||||||||    
T  16509699 ccctagctgccttattgcgacatttgggttgccttcattgcagctttcaacgccttcatttgtgatggatgtgaacgggtggatttagtcccacattgcc 16509798  T
Q  275 tagagatatggtttgtgtagtgtttataaag 305  Q
    || ||| |||| ||  |||||| ||||||||    
T  16509799 taaagacatggcttaagtagtgcttataaag 16509829  T

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Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 270
Target Start/End: Complemental strand, 24055258 - 24055196
Alignment:
Q  208 cttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    ||||||||||  ||||||||||||||||||||||| |||||  |||||| |||||| ||||||    
T  24055258 cttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 24055196  T

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Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 209 - 270
Target Start/End: Original strand, 1408967 - 1409028
Alignment:
Q  209 ttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    |||||||||  ||||||||||||||||||||||| |||||  |||||| |||||| ||||||    
T  1408967 ttcattgcagcctccaacaccttcattgtgttggctttgagggggtggatttagtcccacat 1409028  T

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Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 198 - 263
Target Start/End: Original strand, 32215853 - 32215918
Alignment:
Q  198 tttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagt 263  Q
    ||||| ||| ||||||||||  |||||||||||||||| |||||| ||||| ||||||| ||||||    
T  32215853 tttggtttgccttcattgcagcctccaacaccttcattatgttggttttgagagggtggatttagt 32215918  T

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Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 187 - 270
Target Start/End: Original strand, 19054427 - 19054510
Alignment:
Q  187 taattgcggcatttgggttgtcttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacat 270  Q
    |||||||| | ||||| | | ||||||||||  ||||||||||||||||||||||| |||||  ||||||  ||||| ||||||    
T  19054427 taattgcgacctttggttagccttcattgcagcctccaacaccttcattgtgttggctttgagggggtggaattagtcccacat 19054510  T

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Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 282
Target Start/End: Complemental strand, 5854990 - 5854929
Alignment:
Q  221 tccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattgcctagagata 282  Q
    |||||||| ||||||||||||||| ||||   |||  ||||||||||| |||||||||||||    
T  5854990 tccaacactttcattgtgttgggtgtgaagcagtgaatttagttccacgttgcctagagata 5854929  T

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Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 272
Target Start/End: Complemental strand, 1744991 - 1744927
Alignment:
Q  208 cttcattgcattctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattg 272  Q
    ||||||||||  ||||||||||||||||||||| | |||||  ||||||  ||||| ||||||||    
T  1744991 cttcattgcagcctccaacaccttcattgtgtttgctttgagggggtggagttagtcccacattg 1744927  T

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Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 10733575 - 10733523
Alignment:
Q  220 ctccaacaccttcattgtgttgggtttgaaagggtggctttagttccacattg 272  Q
    |||||||| |||||||||||||| |||||  |||||| |||||| ||||||||    
T  10733575 ctccaacatcttcattgtgttggctttgagggggtggatttagtcccacattg 10733523  T

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