View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18663_high_2 (Length: 305)

Name: NF18663_high_2
Description: NF18663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18663_high_2
NF18663_high_2
[»] chr5 (1 HSPs)
chr5 (166-290)||(8362961-8363085)
[»] scaffold0483 (1 HSPs)
scaffold0483 (69-156)||(3198-3285)
[»] scaffold0109 (1 HSPs)
scaffold0109 (69-156)||(48038-48125)
[»] scaffold0018 (1 HSPs)
scaffold0018 (69-156)||(125607-125694)
[»] chr4 (2 HSPs)
chr4 (69-156)||(14693798-14693885)
chr4 (250-290)||(54222783-54222823)
[»] chr8 (2 HSPs)
chr8 (69-148)||(6788214-6788293)
chr8 (69-148)||(6765784-6765863)
[»] chr7 (1 HSPs)
chr7 (45-229)||(20028105-20028287)
[»] chr2 (2 HSPs)
chr2 (69-156)||(28620984-28621071)
chr2 (69-147)||(28620819-28620897)
[»] chr6 (1 HSPs)
chr6 (69-154)||(14647323-14647408)
[»] chr1 (1 HSPs)
chr1 (250-290)||(34751826-34751866)


Alignment Details
Target: chr5 (Bit Score: 109; Significance: 8e-55; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 166 - 290
Target Start/End: Original strand, 8362961 - 8363085
Alignment:
Q  166 tcattcatttgatctttgataacttcttcttgataatgtttaccaaaaataccatcctccatagctagttatgaaacatcactcttctctcaattgatgt 265  Q
    ||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  8362961 tcattcatttgctctttgataacttcttcttcataatgtttatcaaaaataccatcctccatagctaattatgaaacatcactcttctctcaattgatgt 8363060  T
Q  266 taattatggaaaataattaaataat 290  Q
    |||||||||||||||||||||||||    
T  8363061 taattatggaaaataattaaataat 8363085  T

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Target: scaffold0483 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0483
Description:

Target: scaffold0483; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 69 - 156
Target Start/End: Original strand, 3198 - 3285
Alignment:
Q  69 caaataaaataatttgttcggtcattttaaagttattcggagtacccgatacatatgcagacaagaaacacacctatttcagtatttt 156  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| |||| ||| |||||||| | | ||||||||||| |||||||    
T  3198 caaataaaataatttgttcggtcaatttaaagttattcggagtacctgatatatacgcagacaacagagacacctatttctgtatttt 3285  T

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Target: scaffold0109 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0109
Description:

Target: scaffold0109; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 69 - 156
Target Start/End: Original strand, 48038 - 48125
Alignment:
Q  69 caaataaaataatttgttcggtcattttaaagttattcggagtacccgatacatatgcagacaagaaacacacctatttcagtatttt 156  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| |||| ||| |||||||| | | ||||||||||| |||||||    
T  48038 caaataaaataatttgttcggtcaatttaaagttattcggagtacctgatatatacgcagacaacagagacacctatttctgtatttt 48125  T

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Target: scaffold0018 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 69 - 156
Target Start/End: Original strand, 125607 - 125694
Alignment:
Q  69 caaataaaataatttgttcggtcattttaaagttattcggagtacccgatacatatgcagacaagaaacacacctatttcagtatttt 156  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| |||| ||| |||||||| | | ||||||||||| |||||||    
T  125607 caaataaaataatttgttcggtcaatttaaagttattcggagtacctgatatatacgcagacaacagagacacctatttctgtatttt 125694  T

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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 69 - 156
Target Start/End: Original strand, 14693798 - 14693885
Alignment:
Q  69 caaataaaataatttgttcggtcattttaaagttattcggagtacccgatacatatgcagacaagaaacacacctatttcagtatttt 156  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||| |||| ||| |||||||| ||| ||||||||||| |||||||    
T  14693798 caaataaaataatttattcggtcaatttaaagttattcggagtacctgatatatacgcagacaacaaagacacctatttctgtatttt 14693885  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 54222823 - 54222783
Alignment:
Q  250 ttctctcaattgatgttaattatggaaaataattaaataat 290  Q
    ||||||||||||||||||||||  | |||||||||||||||    
T  54222823 ttctctcaattgatgttaattagagtaaataattaaataat 54222783  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 69 - 148
Target Start/End: Complemental strand, 6788293 - 6788214
Alignment:
Q  69 caaataaaataatttgttcggtcattttaaagttattcggagtacccgatacatatgcagacaagaaacacacctatttc 148  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||| |||| ||||||||| || | | |||||||||||    
T  6788293 caaataaaataatttgttcagtcaatttaaagttattcggagtacctgatatatatgcagataacagagacacctatttc 6788214  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 69 - 148
Target Start/End: Complemental strand, 6765863 - 6765784
Alignment:
Q  69 caaataaaataatttgttcggtcattttaaagttattcggagtacccgatacatatgcagacaagaaacacacctatttc 148  Q
    ||||||||||||||||||| |||| ||||||||||||| ||||||| |||| ||| |||||||| | | |||||||||||    
T  6765863 caaataaaataatttgttcagtcaatttaaagttattcagagtacctgatatatacgcagacaacagagacacctatttc 6765784  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 229
Target Start/End: Complemental strand, 20028287 - 20028105
Alignment:
Q  45 atactattaaatgtttcattcacccaaataaaataatttgttcggtcattttaaagttattcggagtacccgatacatatgcagacaagaaacacaccta 144  Q
    |||||||||||| |||||||||  |||||||||||||||| | ||||| ||||||| ||||||||||||| |||| |||  ||||||| | | |||| ||    
T  20028287 atactattaaatatttcattcatacaaataaaataatttg-taggtcaatttaaagctattcggagtacctgatatatacacagacaacagagacactta 20028189  T
Q  145 tttcagtattttgnnnnnnnntcattcatttgatctttgataacttcttcttgataatgtttaccaaaaataccatcctccatag 229  Q
    |||| |||||||         ||||||| ||| ||||||||||  |||| || ||| |||| |||||||||||| || |||||||    
T  20028188 tttctgtatttt-caaaaaactcattcagttgctctttgataatgtcttgttcatattgttcaccaaaaataccttcatccatag 20028105  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 69 - 156
Target Start/End: Original strand, 28620984 - 28621071
Alignment:
Q  69 caaataaaataatttgttcggtcattttaaagttattcggagtacccgatacatatgcagacaagaaacacacctatttcagtatttt 156  Q
    |||||||||||||||||||||||| |||||||||||||  |||| | |||| ||||| |||||| | | ||||||||||| |||||||    
T  28620984 caaataaaataatttgttcggtcaatttaaagttattcaaagtatctgatatatatgtagacaacatagacacctatttctgtatttt 28621071  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 147
Target Start/End: Complemental strand, 28620897 - 28620819
Alignment:
Q  69 caaataaaataatttgttcggtcattttaaagttattcggagtacccgatacatatgcagacaagaaacacacctattt 147  Q
    ||||||||||| |||||||||||| |||||||||||||||| || | |||| ||| |||||||| | | ||||||||||    
T  28620897 caaataaaatagtttgttcggtcaatttaaagttattcggaatatctgatatatacgcagacaacagagacacctattt 28620819  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 69 - 154
Target Start/End: Original strand, 14647323 - 14647408
Alignment:
Q  69 caaataaaataatttgttcggtcattttaaagttattcggagtacccgatacatatgcagacaagaaacacacctatttcagtatt 154  Q
    |||||||||||||||||||| ||| ||||||||| ||||||||||| |||| ||| ||| |||| | | ||||||||||| |||||    
T  14647323 caaataaaataatttgttcgatcaatttaaagttgttcggagtacctgatatatacgcaaacaacagagacacctatttctgtatt 14647408  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 34751826 - 34751866
Alignment:
Q  250 ttctctcaattgatgttaattatggaaaataattaaataat 290  Q
    |||||||||||||||||||||| || |||||||||||||||    
T  34751826 ttctctcaattgatgttaattagggtaaataattaaataat 34751866  T

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