View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18663_low_1 (Length: 741)
Name: NF18663_low_1
Description: NF18663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18663_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 357 - 729
Target Start/End: Original strand, 42935391 - 42935766
Alignment:
| Q |
357 |
tcagagatattatgtagaaacacatattatcaagttaactaactagtaggactattagcagcagaggaaattaggtgaagcttgatattctccagctgca |
456 |
Q |
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| T |
42935391 |
tcagagatattatgtagaaacacatattatcaagttaattaactagtaggactattagcagcagaggaaattaggtgaagcttgatattctccagctgca |
42935490 |
T |
|
| Q |
457 |
tctccagctgcaagttcttcttcttctcattttccaattctgtcctcaacttagagatctcttgcaccattttctcatcactttcagccacatgaatctc |
556 |
Q |
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| T |
42935491 |
tctccagctgcaagttcttcttcttctcattttccaattctgtcctcaacttagagatctcttgcaccattttctcatcactttcagccacatgaatctc |
42935590 |
T |
|
| Q |
557 |
ctctccaccaattagattcattagaaacttaacttgtcccaactcttgttccaagctctctttcaacacattcaacgttgccaacgtagcttcgcggttc |
656 |
Q |
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| T |
42935591 |
ctctccaccaattagattcattagaaacttaacttgtcccaactcttgttccaagctctctttcaacacattcaacgttgccaacgtagcttcacggttc |
42935690 |
T |
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| Q |
657 |
ttaacaacaccaccaacattttcatgatca---acatcagtagtattggtctttggctccatcacagttcctgatg |
729 |
Q |
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| T |
42935691 |
ttaacaacaccaccgacattttcatgatcaaccacatcagaagtattggtctttggctccatcacagttcctgatg |
42935766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 42935077 - 42935391
Alignment:
| Q |
1 |
tatttccgatttttcatttctctgttaaaataaaactatcccctgccatctagtatttgagaagttcatattgaacgcttgctacagatgcaacggtctc |
100 |
Q |
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| T |
42935077 |
tatttccgatttttcatttctctgttaaaataaaactatcccctgccatctagtatttgagaagttcatattgaacgcttgctacagatgcaacggtctc |
42935176 |
T |
|
| Q |
101 |
tgtaggaccgttggatctaaatttattaaaattgatgtgacggtctctatagggccgtttcatctaaatttattaaaatttagatccaactatcttataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42935177 |
tgtaggaccgttggatctaaatttattaaaattgatgtgacggtctctatagggccgtttcatctaaatttattaaaatttagatccaactatcttataa |
42935276 |
T |
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| Q |
201 |
tccgttgaactgcgcaacagttatagagaatccaaattccgtaacaggagcttaaattctctatgattgttgcacatctccagtagagtatctaacttta |
300 |
Q |
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||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
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| T |
42935277 |
tccgttgcactgtgcaacagttatagagaatccaaattccgtaacaggagcttaaattctctatgattgttgcacatctccggtagagtatctaaattta |
42935376 |
T |
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| Q |
301 |
agaaatacaacatat |
315 |
Q |
| |
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||||||||||||||| |
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| T |
42935377 |
agaaatacaacatat |
42935391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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