View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18663_low_2 (Length: 556)
Name: NF18663_low_2
Description: NF18663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18663_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 9 - 406
Target Start/End: Complemental strand, 1764264 - 1763867
Alignment:
| Q |
9 |
ataattctctaaaaatactagtttgattagttaaaattctgggttgggaaaacccaaacccaagcgtaattccaaaatttaagtttttcattttgtatta |
108 |
Q |
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| T |
1764264 |
ataattctctaaaaatactagtttgattagttaaaattctgggttgggaaaacccaaacccaagcgtaattccaaaatttaagtttttcattttgtatta |
1764165 |
T |
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| Q |
109 |
taatttgaatgctannnnnnnagtgagacattagtccatctaaataaaatcgaggaattttcatatttgatgtgctatgattattgttttgctccatata |
208 |
Q |
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| T |
1764164 |
taatttgaatgctatttttttagtgagacattagtccatctaaataaaatcgaggaattttcatatttgatgtgctatgattattgttttgctccatata |
1764065 |
T |
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| Q |
209 |
tagataaggtagaggcggcaatatttctttatttattttggtagaaatcctttaattgtacaattgtgaattattcttcaaaccatatgaatgtaaaggt |
308 |
Q |
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| T |
1764064 |
tagataaggtagaggcggcaatatttctttatttattttggtagaaatcctttaattgtacaattgtgaattattcttcaaaccatatgaatgtaaaggt |
1763965 |
T |
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| Q |
309 |
tgaatccagagaggttgttggcagtttacaagatagtatggctttgcaaaatgttgcgcaccatattaaccttatgtggtacataatccgtgatttta |
406 |
Q |
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| T |
1763964 |
tgactccagagaggttgttggcagtttacaagatagtatggctttgcaaaatgttgcgcaccatattaaccttatgtggtacataatcaatgatttta |
1763867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 406 - 538
Target Start/End: Complemental strand, 1763844 - 1763712
Alignment:
| Q |
406 |
acatgagaagtgaggtttagatgagaagcttaactacttaaaaatgagtttgatatatacacatggaggaatactcttgacttggttcaagagtttaggt |
505 |
Q |
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| T |
1763844 |
acatgagaagtgaggtttagatgagaagcctaactacttaaaaatgagtttgatatatacacatggaggaatactcttgacttggttcaagagtttaggt |
1763745 |
T |
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| Q |
506 |
tccagctgttgtgaaggggatctgtgtccaacc |
538 |
Q |
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| T |
1763744 |
tccaactgttgtgaaggggatctgtgtccaacc |
1763712 |
T |
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