View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18664_high_15 (Length: 407)
Name: NF18664_high_15
Description: NF18664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18664_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 22 - 360
Target Start/End: Complemental strand, 37084684 - 37084346
Alignment:
| Q |
22 |
gtgctgaatgagcggttgaatgatccagcaatgcaggactgttttgaatcaatatttcccaaagatagcacaagaaacacacggttttccactaacttct |
121 |
Q |
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| T |
37084684 |
gtgctgaatgagcggttgaatgatccagcaatgcaggactgttttgaatcaatatttcccaaagatagcacaagaaacacacggttttccattaacttct |
37084585 |
T |
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| Q |
122 |
tcacgtcgattggacttggcgagcttactaagaatctacgcgtctactataaaagtttgaccttgcggagctcccattcatctgatgaaagtggcagaaa |
221 |
Q |
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| T |
37084584 |
tcacgtcgattggacttggcgagcttactaagaatctacgcgtctactataaaagtttgaccttgcggagctcccattcatctgatgaaagtggcagaaa |
37084485 |
T |
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| Q |
222 |
acgtagaagaaaataaagcaagtgtattgtaaggcctttgcaaaccttttgatttcacaatatgtttaagttggttgactttcctttttaattacggttg |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37084484 |
acgtagaagaaaataaagcaagtgtattgtaaggcctttgcaaaccttttgatttcacaatatgtttaagttggttgactttcctttttaattacggttg |
37084385 |
T |
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| Q |
322 |
atggttagaattcaattttgttgatgtagaaggatgttg |
360 |
Q |
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| T |
37084384 |
atggttagaattcaattctgttgatgtagaaggatgttg |
37084346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 22 - 276
Target Start/End: Original strand, 37184596 - 37184850
Alignment:
| Q |
22 |
gtgctgaatgagcggttgaatgatccagcaatgcaggactgttttgaatcaatatttcccaaagatagcacaagaaacacacggttttccactaacttct |
121 |
Q |
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||||||||||| |||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
37184596 |
gtgctgaatgatcggttgaatgatccagtaatgcaggattgttttgaatcattatttcccaaagatagcacaaaaaacacacggttttccattaacttct |
37184695 |
T |
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| Q |
122 |
tcacgtcgattggacttggcgagcttactaagaatctacgcgtctactataaaagtttgaccttgcggagctcccattcatctgatgaaagtggcagaaa |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||| | |||| | |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
37184696 |
tcacgtcgattggacttggcgagcttactaagaatctaggcgtctatttgaaaaatctgaccttgcggagctcccattcattggatgaaagtggcagaaa |
37184795 |
T |
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| Q |
222 |
acgtagaagaaaataaagcaagtgtattgtaaggcctttgcaaaccttttgattt |
276 |
Q |
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| T |
37184796 |
acgtagaagaaaataaagcaaatgcattttaaggcccttgcaaaccttttgattt |
37184850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 360
Target Start/End: Original strand, 37184866 - 37184947
Alignment:
| Q |
278 |
acaatatgtttaagttggttgactttcctttttaattacggttgatggttagaattcaattttgttgatgtagaaggatgttg |
360 |
Q |
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|||||||||| ||||| ||| |||||||||||| || || |||||| ||||||||| ||| || ||||||||| |||||||| |
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| T |
37184866 |
acaatatgtt-aagttagtttactttcctttttcataactgttgatagttagaattggattctgctgatgtagagggatgttg |
37184947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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