View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18664_high_16 (Length: 403)

Name: NF18664_high_16
Description: NF18664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18664_high_16
NF18664_high_16
[»] chr2 (16 HSPs)
chr2 (17-339)||(31361091-31361413)
chr2 (76-203)||(31387872-31387999)
chr2 (54-189)||(31308047-31308182)
chr2 (54-195)||(31418393-31418535)
chr2 (60-189)||(31324778-31324907)
chr2 (96-208)||(31256585-31256697)
chr2 (253-342)||(31418601-31418690)
chr2 (253-343)||(31324613-31324703)
chr2 (60-202)||(31293602-31293746)
chr2 (255-343)||(31256440-31256528)
chr2 (278-326)||(31375449-31375497)
chr2 (272-326)||(31282381-31282435)
chr2 (104-196)||(31375603-31375695)
chr2 (270-342)||(31387709-31387781)
chr2 (253-320)||(31307899-31307966)
chr2 (253-343)||(31293453-31293543)
[»] chr5 (1 HSPs)
chr5 (278-320)||(36213604-36213646)


Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 17 - 339
Target Start/End: Complemental strand, 31361413 - 31361091
Alignment:
Q  17 taagcactttattatgaaagccgaatgttaaatgtctacttttatttccatggctttgaatcatcatttaccgttttgtttttaaattatatataggcga 116  Q
    |||||||||||||||||||||| |||||| || ||  |||||||||||||||||||||||||| |||||||| |||||||||||||  |||||||||| |    
T  31361413 taagcactttattatgaaagccaaatgttcaaagttcacttttatttccatggctttgaatcaacatttaccattttgtttttaaaaaatatataggcaa 31361314  T
Q  117 ttttcctcgaacaattttactggagaactacccatgacattggccaagctcattacattgcaagatttgtaagtttcaaacttttatgatgtttagagaa 216  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  31361313 ttttcctcgaacaattttactgtagaactaccaatgacattggccaagctcattacattgcaagatttgtaagtttcaagcttttatgatgtttagagaa 31361214  T
Q  217 gaccaaattttgatataatttttatgccctctctgatcaatgcagccgtattacggacacccaattctctggaaagatacctaattttattcaaaactgg 316  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |    
T  31361213 gaccaaattttgatataatttttatgtcctctctgatcaatgcagccatattaccgacacccaattctctggaaagatacctaattttattcaaaactag 31361114  T
Q  317 acaaatatcaagtcactgtatgc 339  Q
    ||||||||||| |||||||||||    
T  31361113 acaaatatcaattcactgtatgc 31361091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 76 - 203
Target Start/End: Complemental strand, 31387999 - 31387872
Alignment:
Q  76 atcatcatttaccgttttgtttttaaattatatataggcgattttcctcgaacaattttactggagaactacccatgacattggccaagctcattacatt 175  Q
    ||||| |||||| ||||||||||  |||||||||||||||||||||||| || ||||||||||||||||||||   |||||| |||||||||| ||||||    
T  31387999 atcataatttactgttttgttttacaattatatataggcgattttcctctaataattttactggagaactacctgcgacattcgccaagctcactacatt 31387900  T
Q  176 gcaagatttgtaagtttcaaacttttat 203  Q
    |||||||||||||| |||||| ||||||    
T  31387899 gcaagatttgtaagcttcaaatttttat 31387872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 54 - 189
Target Start/End: Complemental strand, 31308182 - 31308047
Alignment:
Q  54 acttttatttccatggctttgaatcatcatttaccgttttgtttttaaattatatataggcgattttcctcgaacaattttactggagaactacccatga 153  Q
    ||||| ||||||||| ||| ||||||| |  ||| ||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||   ||    
T  31308182 actttgatttccatgacttagaatcataagatactgttttgtttttcaatgatatataggcgattttcctctaacaattttactggagaactacctgcga 31308083  T
Q  154 cattggccaagctcattacattgcaagatttgtaag 189  Q
    |||| || ||||||| ||||||| ||||||||||||    
T  31308082 cattagctaagctcactacattggaagatttgtaag 31308047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 54 - 195
Target Start/End: Original strand, 31418393 - 31418535
Alignment:
Q  54 acttttatttccatggctttgaatcatcatttaccgttttgttttta-aattatatataggcgattttcctcgaacaattttactggagaactacccatg 152  Q
    ||||| |||| ||| |||| ||||||| |||||| | ||| |||||| |||||||||||||||| |||| || ||||| |||||||||||||||||   |    
T  31418393 actttgattttcattgcttagaatcataatttacagatttttttttacaattatatataggcgactttcatctaacaaatttactggagaactacctgcg 31418492  T
Q  153 acattggccaagctcattacattgcaagatttgtaagtttcaa 195  Q
    ||||| |||||||||| |||||||||||| |||||||||||||    
T  31418493 acattcgccaagctcactacattgcaagagttgtaagtttcaa 31418535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 60 - 189
Target Start/End: Complemental strand, 31324907 - 31324778
Alignment:
Q  60 atttccatggctttgaatcatcatttaccgttttgtttttaaattatatataggcgattttcctcgaacaattttactggagaactacccatgacattgg 159  Q
    ||||| ||||||| ||||||| |||||| ||||||||||| |||||||||||||  | | ||||| |||||||||||| |||||||||| |  ||||||     
T  31324907 atttctatggcttagaatcataatttactgttttgtttttcaattatatataggaaaatgtcctctaacaattttactagagaactacctacaacattgt 31324808  T
Q  160 ccaagctcattacattgcaagatttgtaag 189  Q
    ||||| ||| |||||||| |||||||||||    
T  31324807 ccaaggtcactacattgcgagatttgtaag 31324778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 96 - 208
Target Start/End: Complemental strand, 31256697 - 31256585
Alignment:
Q  96 ttttaaattatatataggcgattttcctcgaacaattttactggagaactacccatgacattggccaagctcattacattgcaagatttgtaagtttcaa 195  Q
    |||| |||||||||||||  | ||||||| ||||||||||| |||||||||||   ||||||||| |||||||  ||||||||||||||||||| |||||    
T  31256697 ttttcaattatatataggaaactttcctctaacaattttaccggagaactacctgcgacattggcaaagctcaccacattgcaagatttgtaagcttcaa 31256598  T
Q  196 acttttatgatgt 208  Q
    | |||||||||||    
T  31256597 atttttatgatgt 31256585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 253 - 342
Target Start/End: Original strand, 31418601 - 31418690
Alignment:
Q  253 tcaatgcagccgtattacggacacccaattctctggaaagatacctaattttattcaaaactggacaaatatcaagtcactgtatgcact 342  Q
    |||||||||||| ||   ||||| ||||||||||||||||||||||||||||||||| |||||||||| ||| ||   ||||||||||||    
T  31418601 tcaatgcagccgaatcgaggacaaccaattctctggaaagatacctaattttattcagaactggacaagtattaataaactgtatgcact 31418690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 253 - 343
Target Start/End: Complemental strand, 31324703 - 31324613
Alignment:
Q  253 tcaatgcagccgtattacggacacccaattctctggaaagatacctaattttattcaaaactggacaaatatcaagtcactgtatgcactc 343  Q
    |||||||||||| ||| | |||| ||| ||   ||||||||||||||| ||||||||||||||||||||||||||  ||||||||| ||||    
T  31324703 tcaatgcagccgaatttcagacaaccagttgcttggaaagatacctaagtttattcaaaactggacaaatatcaacacactgtatgtactc 31324613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 60 - 202
Target Start/End: Complemental strand, 31293746 - 31293602
Alignment:
Q  60 atttccatggctttgaatcatcatttaccgttttgtttttaaattat--atataggcgattttcctcgaacaattttactggagaactacccatgacatt 157  Q
    ||||| ||||||| ||||||| |||| | ||||||||||| |||| |  |||||||  | | ||||| || ||||||||||||||||||||    |||||    
T  31293746 atttctatggcttagaatcataatttgctgttttgtttttcaattgtgtatataggaaaatgtcctctaataattttactggagaactacctgccacatt 31293647  T
Q  158 ggccaagctcattacattgcaagatttgtaagtttcaaactttta 202  Q
    ||| ||||||| ||||||||  |||||||||| |||||| |||||    
T  31293646 ggcaaagctcactacattgcgcgatttgtaagcttcaaagtttta 31293602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 255 - 343
Target Start/End: Complemental strand, 31256528 - 31256440
Alignment:
Q  255 aatgcagccgtattacggacacccaattctctggaaagatacctaattttattcaaaactggacaaatatcaagtcactgtatgcactc 343  Q
    |||||||||  ||| |||||| |||  ||||||||||||||||| |||||||||| || ||||||||||||||  || |||||||||||    
T  31256528 aatgcagccaaatttcggacaaccagctctctggaaagatacctgattttattcagaattggacaaatatcaatacattgtatgcactc 31256440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 278 - 326
Target Start/End: Complemental strand, 31375497 - 31375449
Alignment:
Q  278 caattctctggaaagatacctaattttattcaaaactggacaaatatca 326  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  31375497 caattctctggaaagatacctgattttattcagaactggacaaatatca 31375449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 272 - 326
Target Start/End: Complemental strand, 31282435 - 31282381
Alignment:
Q  272 gacacccaattctctggaaagatacctaattttattcaaaactggacaaatatca 326  Q
    |||| |||||||||||||||||||||| |||||||||| |||||| |||||||||    
T  31282435 gacaaccaattctctggaaagatacctgattttattcagaactggtcaaatatca 31282381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 104 - 196
Target Start/End: Complemental strand, 31375695 - 31375603
Alignment:
Q  104 tatatataggcgattttcctcgaacaattttactggagaactacccatgacattggccaagctcattacattgcaagatttgtaagtttcaaa 196  Q
    ||||||||||| | |||| || |||||||||||||| ||||||||   ||||||||| ||||| | |||||||  ||||||||||| ||||||    
T  31375695 tatatataggcaaatttcatctaacaattttactggcgaactacctgcgacattggcaaagctgactacattgatagatttgtaagcttcaaa 31375603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 342
Target Start/End: Complemental strand, 31387781 - 31387709
Alignment:
Q  270 cggacacccaattctctggaaagatacctaattttattcaaaactggacaaatatcaagtcactgtatgcact 342  Q
    |||||| |||||||||||||||||| ||| ||| |||||| ||||||||||  |||||  ||||||| |||||    
T  31387781 cggacaaccaattctctggaaagattcctgattatattcagaactggacaagcatcaaaacactgtacgcact 31387709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 253 - 320
Target Start/End: Complemental strand, 31307966 - 31307899
Alignment:
Q  253 tcaatgcagccgtattacggacacccaattctctggaaagatacctaattttattcaaaactggacaa 320  Q
    |||||||||| | |||  ||||| |||||| ||||||||||||||  ||| |||||||||||||||||    
T  31307966 tcaatgcagctggattggggacaaccaattttctggaaagatacccgattatattcaaaactggacaa 31307899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 343
Target Start/End: Complemental strand, 31293543 - 31293453
Alignment:
Q  253 tcaatgcagccgtattacggacacccaattctctggaaagatacctaattttattcaaaactggacaaatatcaagtcactgtatgcactc 343  Q
    ||||||||||   ||| |||||| ||| |||||||||||| ||||  |||||||| | |||||||||||||||    ||||||||||||||    
T  31293543 tcaatgcagcgaaatttcggacaaccagttctctggaaaggtaccagattttattaagaactggacaaatatcggtacactgtatgcactc 31293453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 320
Target Start/End: Complemental strand, 36213646 - 36213604
Alignment:
Q  278 caattctctggaaagatacctaattttattcaaaactggacaa 320  Q
    ||||||||||| ||||||||| |||||||||||| ||||||||    
T  36213646 caattctctgggaagatacctgattttattcaaagctggacaa 36213604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University