View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18664_high_17 (Length: 385)
Name: NF18664_high_17
Description: NF18664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18664_high_17 |
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Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 34972012 - 34971793
Alignment:
| Q |
1 |
aaaagttacagagaatttgatattttctcaactctcctatttagtcatattcatcattctagtgtgcataactgagaggaaaaaattgaaggaagatcct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34972012 |
aaaagttacagagaatttgatattttctcaactctcctatttagtcatattcatcattctagtgtgcataactgagaggaaaaaattgaaggaagatcct |
34971913 |
T |
|
| Q |
101 |
ctcaatttcaacgttttgaatattgttgttgaagttgtaaggttagatttctgttaattccattattcattaacgttatcttattaacttttactcaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34971912 |
ctcaatttcaacgttttgaatattgttgttgaagttgtaaggttagatttctgttaattccattattcattaacgttatcttattaacttttactcaaaa |
34971813 |
T |
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| Q |
201 |
taataaaattataggtacat |
220 |
Q |
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|||||||||||||||||||| |
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| T |
34971812 |
taataaaattataggtacat |
34971793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 34953303 - 34953130
Alignment:
| Q |
1 |
aaaagttacagagaatttgatattttctcaactctcctatttagtcatattcatcattctagtgtgcataactgagaggaaaaaattgaaggaagatcct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
34953303 |
aaaagttacagagaatttgatattttctcaactctcctatttagtcatattcatcattctagtatgcataactgagaggaaaaaattgaaggaagatcct |
34953204 |
T |
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| Q |
101 |
ctcaatttcaacgttttgaatattgttgttgaagttgtaaggttagatttctgttaattccattattcattaac |
174 |
Q |
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|| ||||||||||||||||||||||||||||||||| | |||||||||||| ||| |||||||||||||||||| |
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| T |
34953203 |
cttaatttcaacgttttgaatattgttgttgaagttatcaggttagatttcagttcattccattattcattaac |
34953130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 264 - 369
Target Start/End: Complemental strand, 34971170 - 34971065
Alignment:
| Q |
264 |
gtgaacatattctcgacaaaaatattaaaaatttagtgaggtagataatgtagtcactccaatttaatctaaaaaataattgaaagagtaggctcaataa |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
34971170 |
gtgaacatattctcgacaaaaatattaaaaatttagtgaggtagataatgtagtcactccaattaaatctaaaaaataattaaaagagtaggctcaataa |
34971071 |
T |
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| Q |
364 |
tgttgt |
369 |
Q |
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|||||| |
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| T |
34971070 |
tgttgt |
34971065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 35032847 - 35032698
Alignment:
| Q |
1 |
aaaagttacagagaatttgatattttctcaactctcctatttagtcatattcatcattctagtgtgcataactgagaggaaaaaattgaaggaagatcct |
100 |
Q |
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|||||| ||||||||| ||||| |||| | | || ||||||||||| |||||||| ||||| |||||||||||||||||| |||||||||| ||||| |
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| T |
35032847 |
aaaagtaacagagaataaaatattatctcgaatatcttatttagtcattttcatcatactagtttgcataactgagaggaaacaattgaaggacgatcca |
35032748 |
T |
|
| Q |
101 |
ctcaatttcaacgttttgaatattgttgttgaagttgtaaggttagattt |
150 |
Q |
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||||||||||| || || ||||||| |||||||||||| ||||||||||| |
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| T |
35032747 |
ctcaatttcaatgtcttcaatattgctgttgaagttgtcaggttagattt |
35032698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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